Strain Fitness in Escherichia coli BL21 around ECD_01168

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_01167 and ECD_01168 are separated by 99 nucleotidesECD_01168 and ECD_01169 are separated by 1 nucleotidesECD_01169 and ECD_01170 are separated by 200 nucleotides ECD_01167: ECD_01167 - murein tetrapeptide carboxypeptidase; LD-carboxypeptidase A, at 1,230,314 to 1,231,228 _01167 ECD_01168: ECD_01168 - lytic murein endotransglycosylase E, at 1,231,328 to 1,231,939 _01168 ECD_01169: ECD_01169 - flagellar velocity braking protein, c-di-GMP-regulated, at 1,231,941 to 1,232,675 _01169 ECD_01170: ECD_01170 - UPF0410 family putative inner membrane protein, at 1,232,876 to 1,233,130 _01170 Position (kb) 1231 1232Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1230.579 kb on + strand, within ECD_01167at 1230.595 kb on + strand, within ECD_01167at 1231.186 kb on + strandat 1231.262 kb on - strandat 1231.262 kb on - strandat 1231.263 kb on + strandat 1231.313 kb on - strandat 1231.575 kb on + strand, within ECD_01168at 1231.763 kb on + strand, within ECD_01168at 1231.907 kb on + strandat 1231.994 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
remove
1,230,579 + ECD_01167 0.29 -1.3
1,230,595 + ECD_01167 0.31 -1.5
1,231,186 + -2.0
1,231,262 - -0.5
1,231,262 - -1.5
1,231,263 + -0.2
1,231,313 - +1.5
1,231,575 + ECD_01168 0.40 -0.1
1,231,763 + ECD_01168 0.71 +3.1
1,231,907 + +1.1
1,231,994 + -1.4

Or see this region's nucleotide sequence