Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01137 and ECD_01138 are separated by 204 nucleotides ECD_01138 and ECD_01139 are separated by 313 nucleotides ECD_01139 and ECD_01140 are separated by 42 nucleotides ECD_01140 and ECD_01141 are separated by 28 nucleotides
ECD_01137: ECD_01137 - repressor of blue light-responsive genes, at 1,201,487 to 1,202,218
_01137
ECD_01138: ECD_01138 - anti-repressor for YcgE, blue light-responsive; FAD-binding; inactive c-di-GMP phosphodiesterase-like EAL domain protein, at 1,202,423 to 1,203,634
_01138
ECD_01139: ECD_01139 - RcsB connector protein for regulation of biofilm and acid-resistance, at 1,203,948 to 1,204,184
_01139
ECD_01140: ECD_01140 - RcsB connector protein for regulation of biofilm, at 1,204,227 to 1,204,499
_01140
ECD_01141: ECD_01141 - RcsB connector protein for regulation of biofilm and acid-resistance, at 1,204,528 to 1,204,794
_01141
Position (kb)
1202
1203
1204 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1202.045 kb on - strand, within ECD_01137 at 1202.049 kb on - strand, within ECD_01137 at 1202.079 kb on - strand, within ECD_01137 at 1202.579 kb on - strand, within ECD_01138 at 1202.907 kb on - strand, within ECD_01138 at 1202.907 kb on - strand, within ECD_01138 at 1202.992 kb on - strand, within ECD_01138 at 1203.416 kb on - strand, within ECD_01138 at 1203.451 kb on - strand, within ECD_01138 at 1203.602 kb on + strand at 1203.603 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1 remove 1,202,045 - ECD_01137 0.76 -0.6 1,202,049 - ECD_01137 0.77 -0.4 1,202,079 - ECD_01137 0.81 -1.8 1,202,579 - ECD_01138 0.13 +0.1 1,202,907 - ECD_01138 0.40 -1.8 1,202,907 - ECD_01138 0.40 +2.9 1,202,992 - ECD_01138 0.47 -1.9 1,203,416 - ECD_01138 0.82 -1.3 1,203,451 - ECD_01138 0.85 +0.2 1,203,602 + -1.3 1,203,603 - +0.3
Or see this region's nucleotide sequence