Strain Fitness in Escherichia coli BL21 around ECD_01138

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01137 and ECD_01138 are separated by 204 nucleotidesECD_01138 and ECD_01139 are separated by 313 nucleotidesECD_01139 and ECD_01140 are separated by 42 nucleotidesECD_01140 and ECD_01141 are separated by 28 nucleotides ECD_01137: ECD_01137 - repressor of blue light-responsive genes, at 1,201,487 to 1,202,218 _01137 ECD_01138: ECD_01138 - anti-repressor for YcgE, blue light-responsive; FAD-binding; inactive c-di-GMP phosphodiesterase-like EAL domain protein, at 1,202,423 to 1,203,634 _01138 ECD_01139: ECD_01139 - RcsB connector protein for regulation of biofilm and acid-resistance, at 1,203,948 to 1,204,184 _01139 ECD_01140: ECD_01140 - RcsB connector protein for regulation of biofilm, at 1,204,227 to 1,204,499 _01140 ECD_01141: ECD_01141 - RcsB connector protein for regulation of biofilm and acid-resistance, at 1,204,528 to 1,204,794 _01141 Position (kb) 1202 1203 1204Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1202.045 kb on - strand, within ECD_01137at 1202.049 kb on - strand, within ECD_01137at 1202.079 kb on - strand, within ECD_01137at 1202.579 kb on - strand, within ECD_01138at 1202.907 kb on - strand, within ECD_01138at 1202.907 kb on - strand, within ECD_01138at 1202.992 kb on - strand, within ECD_01138at 1203.416 kb on - strand, within ECD_01138at 1203.451 kb on - strand, within ECD_01138at 1203.602 kb on + strandat 1203.603 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
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1,202,045 - ECD_01137 0.76 -0.6
1,202,049 - ECD_01137 0.77 -0.4
1,202,079 - ECD_01137 0.81 -1.8
1,202,579 - ECD_01138 0.13 +0.1
1,202,907 - ECD_01138 0.40 -1.8
1,202,907 - ECD_01138 0.40 +2.9
1,202,992 - ECD_01138 0.47 -1.9
1,203,416 - ECD_01138 0.82 -1.3
1,203,451 - ECD_01138 0.85 +0.2
1,203,602 + -1.3
1,203,603 - +0.3

Or see this region's nucleotide sequence