Strain Fitness in Escherichia coli BL21 around ECD_01124

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_01122 and ECD_01123 overlap by 4 nucleotidesECD_01123 and ECD_01124 are separated by 13 nucleotidesECD_01124 and ECD_01125 are separated by 249 nucleotides ECD_01122: ECD_01122 - spermidine/putrescine ABC transporter permease, at 1,186,194 to 1,186,988 _01122 ECD_01123: ECD_01123 - spermidine/putrescine ABC transporter permease, at 1,186,985 to 1,187,812 _01123 ECD_01124: ECD_01124 - spermidine/putrescine ABC transporter ATPase, at 1,187,826 to 1,188,962 _01124 ECD_01125: ECD_01125 - peptidase T, at 1,189,212 to 1,190,438 _01125 Position (kb) 1187 1188 1189Strain fitness (log2 ratio) -1 0 1 2at 1186.934 kb on - strandat 1187.176 kb on - strand, within ECD_01123at 1187.649 kb on - strand, within ECD_01123at 1188.067 kb on - strand, within ECD_01124at 1188.067 kb on - strand, within ECD_01124at 1188.128 kb on - strand, within ECD_01124at 1188.950 kb on + strandat 1189.178 kb on + strandat 1189.366 kb on + strand, within ECD_01125at 1189.610 kb on + strand, within ECD_01125

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
remove
1,186,934 - +0.6
1,187,176 - ECD_01123 0.23 +0.6
1,187,649 - ECD_01123 0.80 -0.5
1,188,067 - ECD_01124 0.21 +0.3
1,188,067 - ECD_01124 0.21 +0.9
1,188,128 - ECD_01124 0.27 +1.5
1,188,950 + +1.3
1,189,178 + +0.6
1,189,366 + ECD_01125 0.13 +2.5
1,189,610 + ECD_01125 0.32 -1.3

Or see this region's nucleotide sequence