Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01080 and ECD_01081 are separated by 134 nucleotides ECD_01081 and ECD_01082 are separated by 117 nucleotides ECD_01082 and ECD_01083 are separated by 111 nucleotides ECD_01083 and ECD_01084 are separated by 198 nucleotides
ECD_01080: ECD_01080 - endoribonuclease; RNA-binding protein, at 1,143,749 to 1,146,934
_01080
ECD_01081: ECD_01081 - uncharacterized protein, at 1,147,069 to 1,147,389
_01081
ECD_01082: ECD_01082 - 23S rRNA pseudouridine(955,2504,2580) synthase, at 1,147,507 to 1,148,466
_01082
ECD_01083: ECD_01083 - m(7)GTP pyrophosphatase, at 1,148,578 to 1,149,162
_01083
ECD_01084: ECD_01084 - DUF177 family protein, at 1,149,361 to 1,149,882
_01084
Position (kb) 1147
1148
1149 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1147.133 kb on - strand, within ECD_01081 at 1147.205 kb on - strand, within ECD_01081 at 1147.327 kb on - strand, within ECD_01081 at 1147.327 kb on - strand, within ECD_01081 at 1147.431 kb on - strand at 1147.452 kb on + strand at 1147.569 kb on + strand at 1147.665 kb on + strand, within ECD_01082 at 1147.668 kb on + strand, within ECD_01082 at 1147.707 kb on + strand, within ECD_01082 at 1147.793 kb on + strand, within ECD_01082 at 1147.793 kb on + strand, within ECD_01082 at 1147.793 kb on + strand, within ECD_01082 at 1147.795 kb on + strand, within ECD_01082 at 1147.844 kb on + strand, within ECD_01082 at 1147.862 kb on + strand, within ECD_01082 at 1148.121 kb on + strand, within ECD_01082 at 1148.166 kb on + strand, within ECD_01082 at 1148.208 kb on + strand, within ECD_01082 at 1148.247 kb on + strand, within ECD_01082 at 1148.247 kb on + strand, within ECD_01082 at 1148.476 kb on - strand at 1148.477 kb on + strand at 1148.477 kb on + strand at 1148.557 kb on - strand at 1148.743 kb on - strand, within ECD_01083 at 1148.750 kb on + strand, within ECD_01083 at 1148.750 kb on + strand, within ECD_01083 at 1148.751 kb on - strand, within ECD_01083 at 1148.751 kb on - strand, within ECD_01083 at 1148.856 kb on - strand, within ECD_01083 at 1148.856 kb on - strand, within ECD_01083 at 1148.856 kb on - strand, within ECD_01083 at 1148.856 kb on - strand, within ECD_01083 at 1148.950 kb on + strand, within ECD_01083 at 1148.950 kb on + strand, within ECD_01083 at 1148.951 kb on - strand, within ECD_01083 at 1148.968 kb on - strand, within ECD_01083 at 1148.972 kb on - strand, within ECD_01083 at 1149.180 kb on - strand at 1149.181 kb on + strand at 1149.181 kb on + strand at 1149.182 kb on - strand at 1149.209 kb on + strand at 1149.377 kb on + strand at 1149.402 kb on + strand at 1149.432 kb on + strand, within ECD_01084 at 1149.436 kb on + strand, within ECD_01084 at 1149.436 kb on + strand, within ECD_01084 at 1149.436 kb on + strand, within ECD_01084
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1 remove 1,147,133 - ECD_01081 0.20 +1.7 1,147,205 - ECD_01081 0.42 +1.7 1,147,327 - ECD_01081 0.80 +1.5 1,147,327 - ECD_01081 0.80 +1.5 1,147,431 - -0.8 1,147,452 + -0.5 1,147,569 + +1.5 1,147,665 + ECD_01082 0.16 +1.4 1,147,668 + ECD_01082 0.17 +2.0 1,147,707 + ECD_01082 0.21 +1.5 1,147,793 + ECD_01082 0.30 +1.4 1,147,793 + ECD_01082 0.30 +1.6 1,147,793 + ECD_01082 0.30 +1.9 1,147,795 + ECD_01082 0.30 +1.9 1,147,844 + ECD_01082 0.35 +1.1 1,147,862 + ECD_01082 0.37 +2.5 1,148,121 + ECD_01082 0.64 +1.7 1,148,166 + ECD_01082 0.69 +1.1 1,148,208 + ECD_01082 0.73 +1.3 1,148,247 + ECD_01082 0.77 +1.3 1,148,247 + ECD_01082 0.77 +1.8 1,148,476 - -0.9 1,148,477 + +1.3 1,148,477 + +0.0 1,148,557 - -0.9 1,148,743 - ECD_01083 0.28 -0.0 1,148,750 + ECD_01083 0.29 -3.0 1,148,750 + ECD_01083 0.29 -2.2 1,148,751 - ECD_01083 0.30 -0.2 1,148,751 - ECD_01083 0.30 +0.5 1,148,856 - ECD_01083 0.48 -0.5 1,148,856 - ECD_01083 0.48 +0.1 1,148,856 - ECD_01083 0.48 -0.6 1,148,856 - ECD_01083 0.48 +1.4 1,148,950 + ECD_01083 0.64 +0.2 1,148,950 + ECD_01083 0.64 -0.7 1,148,951 - ECD_01083 0.64 -0.3 1,148,968 - ECD_01083 0.67 +1.9 1,148,972 - ECD_01083 0.67 +1.0 1,149,180 - -0.3 1,149,181 + +0.4 1,149,181 + +0.1 1,149,182 - +0.2 1,149,209 + -0.1 1,149,377 + +1.8 1,149,402 + +2.3 1,149,432 + ECD_01084 0.14 +2.0 1,149,436 + ECD_01084 0.14 +1.3 1,149,436 + ECD_01084 0.14 +1.7 1,149,436 + ECD_01084 0.14 +1.9
Or see this region's nucleotide sequence