Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01038 and ECD_01039 are separated by 40 nucleotides ECD_01039 and ECD_01040 are separated by 58 nucleotides ECD_01040 and ECD_01041 are separated by 120 nucleotides ECD_01041 and ECD_01042 are separated by 94 nucleotides
ECD_01038: ECD_01038 - curlin nucleator protein, minor subunit in curli complex, at 1,106,518 to 1,106,973
_01038
ECD_01039: ECD_01039 - curlin subunit, amyloid curli fibers, cryptic, at 1,107,014 to 1,107,469
_01039
ECD_01040: ECD_01040 - curli assembly protein, at 1,107,528 to 1,107,860
_01040
ECD_01041: ECD_01041 - uncharacterized protein, at 1,107,981 to 1,108,292
_01041
ECD_01042: ECD_01042 - O-acetyl-ADP-ribose deacetylase; RNase III inhibitor during cold shock; putative cardiolipin synthase C regulatory subunit, at 1,108,387 to 1,108,920
_01042
Position (kb) 1107
1108 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1106.745 kb on + strand, within ECD_01038 at 1107.030 kb on + strand at 1107.124 kb on + strand, within ECD_01039 at 1107.221 kb on - strand, within ECD_01039 at 1107.471 kb on - strand at 1107.575 kb on + strand, within ECD_01040 at 1107.601 kb on - strand, within ECD_01040 at 1107.627 kb on - strand, within ECD_01040 at 1107.931 kb on - strand at 1108.160 kb on + strand, within ECD_01041 at 1108.287 kb on - strand at 1108.419 kb on + strand at 1108.422 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1 remove 1,106,745 + ECD_01038 0.50 -0.1 1,107,030 + -0.2 1,107,124 + ECD_01039 0.24 -2.4 1,107,221 - ECD_01039 0.45 -0.8 1,107,471 - +0.4 1,107,575 + ECD_01040 0.14 -1.9 1,107,601 - ECD_01040 0.22 -2.1 1,107,627 - ECD_01040 0.30 -1.5 1,107,931 - +0.1 1,108,160 + ECD_01041 0.57 +0.0 1,108,287 - +2.7 1,108,419 + -1.4 1,108,422 + +1.0
Or see this region's nucleotide sequence