Strain Fitness in Escherichia coli BL21 around ECD_00981

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00979 and ECD_00980 overlap by 4 nucleotidesECD_00980 and ECD_00981 are separated by 133 nucleotidesECD_00981 and ECD_00982 are separated by 11 nucleotides ECD_00979: ECD_00979 - putative HyaA chaperone, at 1,041,443 to 1,041,841 _00979 ECD_00980: ECD_00980 - hydrogenase-1 protein nickel incorporation factor, at 1,041,838 to 1,042,695 _00980 ECD_00981: ECD_00981 - cytochrome bd-II oxidase, subunit I, at 1,042,829 to 1,044,373 _00981 ECD_00982: ECD_00982 - cytochrome bd-II oxidase, subunit II, at 1,044,385 to 1,045,521 _00982 Position (kb) 1042 1043 1044 1045Strain fitness (log2 ratio) -3 -2 -1 0 1at 1042.098 kb on + strand, within ECD_00980at 1042.341 kb on - strand, within ECD_00980at 1042.370 kb on + strand, within ECD_00980at 1042.370 kb on + strand, within ECD_00980at 1042.370 kb on + strand, within ECD_00980at 1042.370 kb on + strand, within ECD_00980at 1042.371 kb on - strand, within ECD_00980at 1042.482 kb on + strand, within ECD_00980at 1042.504 kb on + strand, within ECD_00980at 1042.504 kb on + strand, within ECD_00980at 1042.504 kb on + strand, within ECD_00980at 1042.504 kb on + strand, within ECD_00980at 1042.541 kb on + strand, within ECD_00980at 1042.542 kb on - strand, within ECD_00980at 1042.542 kb on - strand, within ECD_00980at 1042.560 kb on - strand, within ECD_00980at 1042.661 kb on + strandat 1042.661 kb on + strandat 1042.662 kb on - strandat 1042.704 kb on + strandat 1042.746 kb on - strandat 1042.930 kb on + strandat 1042.933 kb on + strandat 1042.970 kb on + strandat 1042.971 kb on - strandat 1043.087 kb on + strand, within ECD_00981at 1043.422 kb on + strand, within ECD_00981at 1043.422 kb on + strand, within ECD_00981at 1043.444 kb on + strand, within ECD_00981at 1043.444 kb on + strand, within ECD_00981at 1043.449 kb on - strand, within ECD_00981at 1043.727 kb on + strand, within ECD_00981at 1043.794 kb on + strand, within ECD_00981at 1043.795 kb on - strand, within ECD_00981at 1043.808 kb on + strand, within ECD_00981at 1044.273 kb on - strandat 1044.620 kb on - strand, within ECD_00982at 1044.643 kb on + strand, within ECD_00982at 1044.947 kb on + strand, within ECD_00982

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
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1,042,098 + ECD_00980 0.30 -1.8
1,042,341 - ECD_00980 0.59 +0.5
1,042,370 + ECD_00980 0.62 -0.3
1,042,370 + ECD_00980 0.62 -0.5
1,042,370 + ECD_00980 0.62 +0.1
1,042,370 + ECD_00980 0.62 -0.5
1,042,371 - ECD_00980 0.62 -0.3
1,042,482 + ECD_00980 0.75 -1.0
1,042,504 + ECD_00980 0.78 -2.1
1,042,504 + ECD_00980 0.78 -1.5
1,042,504 + ECD_00980 0.78 -2.0
1,042,504 + ECD_00980 0.78 -0.2
1,042,541 + ECD_00980 0.82 -0.3
1,042,542 - ECD_00980 0.82 -2.4
1,042,542 - ECD_00980 0.82 +0.4
1,042,560 - ECD_00980 0.84 -2.0
1,042,661 + +0.9
1,042,661 + +1.2
1,042,662 - +0.5
1,042,704 + -1.3
1,042,746 - -1.3
1,042,930 + -3.4
1,042,933 + -0.9
1,042,970 + -0.5
1,042,971 - +0.3
1,043,087 + ECD_00981 0.17 -1.9
1,043,422 + ECD_00981 0.38 -1.8
1,043,422 + ECD_00981 0.38 +0.5
1,043,444 + ECD_00981 0.40 -0.5
1,043,444 + ECD_00981 0.40 +0.8
1,043,449 - ECD_00981 0.40 -0.5
1,043,727 + ECD_00981 0.58 -0.6
1,043,794 + ECD_00981 0.62 +1.2
1,043,795 - ECD_00981 0.63 +0.6
1,043,808 + ECD_00981 0.63 -0.7
1,044,273 - -0.7
1,044,620 - ECD_00982 0.21 -1.1
1,044,643 + ECD_00982 0.23 +0.4
1,044,947 + ECD_00982 0.49 +0.3

Or see this region's nucleotide sequence