Strain Fitness in Escherichia coli BL21 around ECD_00907

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00906 and ECD_00907 are separated by 191 nucleotidesECD_00907 and ECD_00908 are separated by 54 nucleotides ECD_00906: ECD_00906 - pyruvate formate-lyase 1-activating enzyme; [formate-C-acetyltransferase 1]-activating enzyme; PFL activase, at 955,431 to 956,171 _00906 ECD_00907: ECD_00907 - formate C-acetyltransferase 1, anaerobic; pyruvate formate-lyase 1, at 956,363 to 958,645 _00907 ECD_00908: ECD_00908 - formate channel, at 958,700 to 959,557 _00908 Position (kb) 956 957 958 959Strain fitness (log2 ratio) -2 -1 0 1at 956.266 kb on - strandat 956.269 kb on + strandat 956.270 kb on - strandat 956.270 kb on - strandat 956.270 kb on - strandat 956.270 kb on - strandat 956.365 kb on - strandat 956.368 kb on + strandat 956.809 kb on - strand, within ECD_00907at 956.809 kb on - strand, within ECD_00907at 956.925 kb on - strand, within ECD_00907at 956.925 kb on - strand, within ECD_00907at 957.010 kb on + strand, within ECD_00907at 957.022 kb on - strand, within ECD_00907at 957.132 kb on + strand, within ECD_00907at 957.133 kb on - strand, within ECD_00907at 957.148 kb on - strand, within ECD_00907at 957.229 kb on - strand, within ECD_00907at 957.312 kb on + strand, within ECD_00907at 957.313 kb on - strand, within ECD_00907at 957.364 kb on + strand, within ECD_00907at 957.403 kb on - strand, within ECD_00907at 957.403 kb on - strand, within ECD_00907at 957.403 kb on - strand, within ECD_00907at 957.448 kb on - strand, within ECD_00907at 957.787 kb on - strand, within ECD_00907at 957.845 kb on - strand, within ECD_00907at 957.867 kb on + strand, within ECD_00907at 957.868 kb on - strand, within ECD_00907at 957.868 kb on - strand, within ECD_00907at 958.129 kb on - strand, within ECD_00907at 958.129 kb on - strand, within ECD_00907at 958.316 kb on - strand, within ECD_00907at 958.380 kb on + strand, within ECD_00907at 958.473 kb on - strandat 958.648 kb on - strandat 958.655 kb on - strandat 958.655 kb on - strandat 958.726 kb on - strandat 958.738 kb on - strandat 958.738 kb on - strandat 958.912 kb on + strand, within ECD_00908at 958.913 kb on - strand, within ECD_00908at 958.913 kb on - strand, within ECD_00908at 958.976 kb on - strand, within ECD_00908at 959.033 kb on + strand, within ECD_00908at 959.034 kb on - strand, within ECD_00908at 959.144 kb on - strand, within ECD_00908at 959.145 kb on + strand, within ECD_00908at 959.145 kb on + strand, within ECD_00908at 959.146 kb on - strand, within ECD_00908at 959.166 kb on - strand, within ECD_00908at 959.166 kb on - strand, within ECD_00908at 959.178 kb on - strand, within ECD_00908at 959.288 kb on - strand, within ECD_00908at 959.404 kb on - strand, within ECD_00908at 959.404 kb on - strand, within ECD_00908at 959.404 kb on - strand, within ECD_00908

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
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956,266 - -2.6
956,269 + -1.2
956,270 - -1.2
956,270 - -0.7
956,270 - -1.2
956,270 - +0.8
956,365 - -0.4
956,368 + -1.8
956,809 - ECD_00907 0.20 -0.0
956,809 - ECD_00907 0.20 +1.0
956,925 - ECD_00907 0.25 -1.8
956,925 - ECD_00907 0.25 -0.4
957,010 + ECD_00907 0.28 -1.8
957,022 - ECD_00907 0.29 -1.2
957,132 + ECD_00907 0.34 -1.0
957,133 - ECD_00907 0.34 -0.4
957,148 - ECD_00907 0.34 +0.3
957,229 - ECD_00907 0.38 +0.8
957,312 + ECD_00907 0.42 -0.7
957,313 - ECD_00907 0.42 -1.4
957,364 + ECD_00907 0.44 -0.2
957,403 - ECD_00907 0.46 +0.9
957,403 - ECD_00907 0.46 -1.7
957,403 - ECD_00907 0.46 -2.3
957,448 - ECD_00907 0.48 -0.5
957,787 - ECD_00907 0.62 -0.2
957,845 - ECD_00907 0.65 -1.6
957,867 + ECD_00907 0.66 -1.9
957,868 - ECD_00907 0.66 +0.3
957,868 - ECD_00907 0.66 +0.3
958,129 - ECD_00907 0.77 +1.0
958,129 - ECD_00907 0.77 -1.2
958,316 - ECD_00907 0.86 -1.1
958,380 + ECD_00907 0.88 +0.0
958,473 - -0.7
958,648 - -1.3
958,655 - +0.7
958,655 - -2.6
958,726 - +1.2
958,738 - +1.3
958,738 - +0.1
958,912 + ECD_00908 0.25 -0.4
958,913 - ECD_00908 0.25 -0.7
958,913 - ECD_00908 0.25 -0.1
958,976 - ECD_00908 0.32 -0.1
959,033 + ECD_00908 0.39 -2.0
959,034 - ECD_00908 0.39 +0.4
959,144 - ECD_00908 0.52 -0.5
959,145 + ECD_00908 0.52 -0.9
959,145 + ECD_00908 0.52 -1.0
959,146 - ECD_00908 0.52 -1.6
959,166 - ECD_00908 0.54 +0.4
959,166 - ECD_00908 0.54 +0.3
959,178 - ECD_00908 0.56 -1.1
959,288 - ECD_00908 0.69 +0.3
959,404 - ECD_00908 0.82 -1.4
959,404 - ECD_00908 0.82 +0.6
959,404 - ECD_00908 0.82 -2.1

Or see this region's nucleotide sequence