Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00882 and ECD_00883 are separated by 114 nucleotides ECD_00883 and ECD_00884 overlap by 4 nucleotides
ECD_00882: ECD_00882 - DUF535 family protein, at 922,831 to 923,823
_00882
ECD_00883: ECD_00883 - macrolide transporter membrane fusion protein (MFP) component, at 923,938 to 925,053
_00883
ECD_00884: ECD_00884 - macrolide ABC transporter peremase/ATPase, at 925,050 to 926,996
_00884
Position (kb) 923
924
925
926 Strain fitness (log2 ratio) -2
-1
0
1
2 at 922.943 kb on - strand, within ECD_00882 at 922.943 kb on - strand, within ECD_00882 at 923.156 kb on - strand, within ECD_00882 at 923.429 kb on - strand, within ECD_00882 at 923.451 kb on + strand, within ECD_00882 at 923.451 kb on + strand, within ECD_00882 at 923.483 kb on - strand, within ECD_00882 at 923.483 kb on - strand, within ECD_00882 at 923.573 kb on - strand, within ECD_00882 at 923.573 kb on - strand, within ECD_00882 at 923.632 kb on - strand, within ECD_00882 at 923.716 kb on - strand, within ECD_00882 at 923.771 kb on - strand at 923.782 kb on - strand at 923.802 kb on + strand at 923.802 kb on + strand at 923.803 kb on - strand at 923.803 kb on - strand at 923.803 kb on - strand at 923.856 kb on + strand at 923.987 kb on + strand at 924.006 kb on + strand at 924.725 kb on + strand, within ECD_00883 at 924.763 kb on + strand, within ECD_00883 at 924.810 kb on + strand, within ECD_00883 at 924.906 kb on + strand, within ECD_00883 at 924.924 kb on + strand, within ECD_00883 at 924.924 kb on + strand, within ECD_00883 at 924.924 kb on + strand, within ECD_00883 at 924.967 kb on - strand at 925.079 kb on + strand at 925.143 kb on + strand at 925.387 kb on - strand, within ECD_00884 at 925.468 kb on - strand, within ECD_00884 at 925.468 kb on - strand, within ECD_00884 at 925.635 kb on - strand, within ECD_00884 at 925.868 kb on - strand, within ECD_00884 at 925.967 kb on + strand, within ECD_00884 at 925.967 kb on + strand, within ECD_00884 at 925.982 kb on + strand, within ECD_00884 at 925.983 kb on - strand, within ECD_00884 at 926.028 kb on + strand, within ECD_00884 at 926.046 kb on + strand, within ECD_00884
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1 remove 922,943 - ECD_00882 0.11 +0.4 922,943 - ECD_00882 0.11 +1.0 923,156 - ECD_00882 0.33 +1.2 923,429 - ECD_00882 0.60 +1.4 923,451 + ECD_00882 0.62 -1.2 923,451 + ECD_00882 0.62 -1.2 923,483 - ECD_00882 0.66 +0.3 923,483 - ECD_00882 0.66 +0.5 923,573 - ECD_00882 0.75 +1.6 923,573 - ECD_00882 0.75 +1.2 923,632 - ECD_00882 0.81 +0.4 923,716 - ECD_00882 0.89 +1.1 923,771 - +0.3 923,782 - +1.0 923,802 + -2.0 923,802 + -2.4 923,803 - +0.3 923,803 - +1.0 923,803 - +1.0 923,856 + -0.6 923,987 + +0.6 924,006 + +0.0 924,725 + ECD_00883 0.71 +0.2 924,763 + ECD_00883 0.74 -0.3 924,810 + ECD_00883 0.78 +1.6 924,906 + ECD_00883 0.87 +0.8 924,924 + ECD_00883 0.88 +0.9 924,924 + ECD_00883 0.88 +2.0 924,924 + ECD_00883 0.88 +0.1 924,967 - +1.0 925,079 + +1.7 925,143 + +2.1 925,387 - ECD_00884 0.17 -1.5 925,468 - ECD_00884 0.21 -0.4 925,468 - ECD_00884 0.21 -2.5 925,635 - ECD_00884 0.30 -1.2 925,868 - ECD_00884 0.42 -0.8 925,967 + ECD_00884 0.47 +0.1 925,967 + ECD_00884 0.47 +0.2 925,982 + ECD_00884 0.48 -1.0 925,983 - ECD_00884 0.48 +1.2 926,028 + ECD_00884 0.50 -2.7 926,046 + ECD_00884 0.51 -1.0
Or see this region's nucleotide sequence