Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00880 and ECD_00881 are separated by 424 nucleotides ECD_00881 and ECD_00882 overlap by 4 nucleotides
ECD_00880: ECD_00880 - aquaporin Z, at 920,056 to 920,751
_00880
ECD_00881: ECD_00881 - putative OLD family ATP-dependent endonuclease; DUF2813 family protein, at 921,176 to 922,834
_00881
ECD_00882: ECD_00882 - DUF535 family protein, at 922,831 to 923,823
_00882
Position (kb) 921
922
923 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 920.197 kb on - strand, within ECD_00880 at 920.449 kb on + strand, within ECD_00880 at 920.584 kb on - strand, within ECD_00880 at 920.922 kb on + strand at 921.048 kb on + strand at 921.111 kb on - strand at 921.300 kb on + strand at 921.374 kb on - strand, within ECD_00881 at 921.633 kb on + strand, within ECD_00881 at 922.194 kb on + strand, within ECD_00881 at 922.480 kb on - strand, within ECD_00881 at 922.541 kb on - strand, within ECD_00881 at 922.603 kb on + strand, within ECD_00881 at 922.603 kb on + strand, within ECD_00881 at 922.604 kb on - strand, within ECD_00881 at 922.604 kb on - strand, within ECD_00881 at 922.604 kb on - strand, within ECD_00881 at 922.884 kb on - strand at 922.943 kb on - strand, within ECD_00882 at 922.943 kb on - strand, within ECD_00882 at 923.156 kb on - strand, within ECD_00882 at 923.429 kb on - strand, within ECD_00882 at 923.451 kb on + strand, within ECD_00882 at 923.451 kb on + strand, within ECD_00882 at 923.483 kb on - strand, within ECD_00882 at 923.483 kb on - strand, within ECD_00882 at 923.573 kb on - strand, within ECD_00882 at 923.573 kb on - strand, within ECD_00882 at 923.632 kb on - strand, within ECD_00882 at 923.716 kb on - strand, within ECD_00882 at 923.771 kb on - strand at 923.782 kb on - strand at 923.802 kb on + strand at 923.802 kb on + strand at 923.803 kb on - strand at 923.803 kb on - strand at 923.803 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1 remove 920,197 - ECD_00880 0.20 +0.4 920,449 + ECD_00880 0.56 -1.8 920,584 - ECD_00880 0.76 -2.0 920,922 + +0.4 921,048 + -0.6 921,111 - +0.5 921,300 + -0.7 921,374 - ECD_00881 0.12 -1.2 921,633 + ECD_00881 0.28 -1.0 922,194 + ECD_00881 0.61 +0.2 922,480 - ECD_00881 0.79 -1.5 922,541 - ECD_00881 0.82 -0.9 922,603 + ECD_00881 0.86 -0.5 922,603 + ECD_00881 0.86 -1.0 922,604 - ECD_00881 0.86 -0.5 922,604 - ECD_00881 0.86 -1.9 922,604 - ECD_00881 0.86 -3.2 922,884 - +0.5 922,943 - ECD_00882 0.11 +0.4 922,943 - ECD_00882 0.11 +1.0 923,156 - ECD_00882 0.33 +1.2 923,429 - ECD_00882 0.60 +1.4 923,451 + ECD_00882 0.62 -1.2 923,451 + ECD_00882 0.62 -1.2 923,483 - ECD_00882 0.66 +0.3 923,483 - ECD_00882 0.66 +0.5 923,573 - ECD_00882 0.75 +1.6 923,573 - ECD_00882 0.75 +1.2 923,632 - ECD_00882 0.81 +0.4 923,716 - ECD_00882 0.89 +1.1 923,771 - +0.3 923,782 - +1.0 923,802 + -2.0 923,802 + -2.4 923,803 - +0.3 923,803 - +1.0 923,803 - +1.0
Or see this region's nucleotide sequence