Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00795 and ECD_00796 overlap by 14 nucleotides ECD_00796 and ECD_00797 are separated by 19 nucleotides
ECD_00795: ECD_00795 - Isoaspartyl peptidase, at 850,487 to 851,452
_00795
ECD_00796: ECD_00796 - glutathione ABC transporter ATPase, at 851,439 to 853,310
_00796
ECD_00797: ECD_00797 - glutathione ABC transporter periplasmic binding protein, at 853,330 to 854,868
_00797
Position (kb) 851
852
853
854 Strain fitness (log2 ratio) -2
-1
0
1
2 at 850.443 kb on + strand at 850.447 kb on + strand at 850.483 kb on + strand at 850.483 kb on + strand at 850.486 kb on + strand at 850.563 kb on + strand at 850.563 kb on + strand at 850.635 kb on + strand, within ECD_00795 at 850.753 kb on + strand, within ECD_00795 at 850.944 kb on + strand, within ECD_00795 at 850.985 kb on - strand, within ECD_00795 at 851.093 kb on - strand, within ECD_00795 at 851.213 kb on + strand, within ECD_00795 at 851.277 kb on + strand, within ECD_00795 at 851.372 kb on + strand at 851.413 kb on + strand at 851.413 kb on + strand at 851.414 kb on - strand at 851.417 kb on + strand at 851.418 kb on - strand at 851.504 kb on + strand at 851.801 kb on + strand, within ECD_00796 at 851.896 kb on + strand, within ECD_00796 at 852.068 kb on - strand, within ECD_00796 at 852.228 kb on + strand, within ECD_00796 at 852.228 kb on + strand, within ECD_00796 at 852.244 kb on + strand, within ECD_00796 at 852.285 kb on + strand, within ECD_00796 at 852.379 kb on + strand, within ECD_00796 at 852.746 kb on + strand, within ECD_00796 at 852.987 kb on + strand, within ECD_00796 at 853.050 kb on + strand, within ECD_00796 at 853.205 kb on + strand at 853.266 kb on + strand at 853.267 kb on - strand at 853.267 kb on - strand at 853.304 kb on + strand at 853.305 kb on - strand at 853.305 kb on - strand at 853.309 kb on - strand at 853.343 kb on + strand at 853.343 kb on + strand at 853.459 kb on + strand at 853.479 kb on - strand at 853.587 kb on + strand, within ECD_00797 at 853.591 kb on + strand, within ECD_00797 at 853.592 kb on - strand, within ECD_00797 at 853.715 kb on - strand, within ECD_00797 at 853.797 kb on + strand, within ECD_00797 at 853.982 kb on + strand, within ECD_00797 at 854.127 kb on + strand, within ECD_00797 at 854.127 kb on + strand, within ECD_00797 at 854.139 kb on + strand, within ECD_00797 at 854.139 kb on + strand, within ECD_00797 at 854.140 kb on - strand, within ECD_00797 at 854.140 kb on - strand, within ECD_00797 at 854.145 kb on + strand, within ECD_00797 at 854.259 kb on + strand, within ECD_00797
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1 remove 850,443 + +0.6 850,447 + +1.4 850,483 + +0.6 850,483 + -0.2 850,486 + +0.5 850,563 + +1.1 850,563 + -0.4 850,635 + ECD_00795 0.15 -0.1 850,753 + ECD_00795 0.28 +1.9 850,944 + ECD_00795 0.47 +0.4 850,985 - ECD_00795 0.52 -1.4 851,093 - ECD_00795 0.63 -2.2 851,213 + ECD_00795 0.75 -1.9 851,277 + ECD_00795 0.82 +0.5 851,372 + -0.1 851,413 + +0.2 851,413 + +0.0 851,414 - +0.0 851,417 + -0.3 851,418 - +0.9 851,504 + +0.1 851,801 + ECD_00796 0.19 -0.1 851,896 + ECD_00796 0.24 -0.6 852,068 - ECD_00796 0.34 -1.8 852,228 + ECD_00796 0.42 -0.2 852,228 + ECD_00796 0.42 -0.9 852,244 + ECD_00796 0.43 -0.5 852,285 + ECD_00796 0.45 -1.3 852,379 + ECD_00796 0.50 -0.6 852,746 + ECD_00796 0.70 -0.4 852,987 + ECD_00796 0.83 -0.3 853,050 + ECD_00796 0.86 +0.4 853,205 + +0.1 853,266 + -0.4 853,267 - +0.5 853,267 - +0.1 853,304 + +0.6 853,305 - -0.0 853,305 - +0.2 853,309 - -0.7 853,343 + -1.3 853,343 + -0.5 853,459 + -0.4 853,479 - -1.2 853,587 + ECD_00797 0.17 -0.6 853,591 + ECD_00797 0.17 -0.4 853,592 - ECD_00797 0.17 -0.4 853,715 - ECD_00797 0.25 -1.2 853,797 + ECD_00797 0.30 +0.2 853,982 + ECD_00797 0.42 -0.7 854,127 + ECD_00797 0.52 +0.0 854,127 + ECD_00797 0.52 -0.3 854,139 + ECD_00797 0.53 -0.5 854,139 + ECD_00797 0.53 +1.1 854,140 - ECD_00797 0.53 +0.4 854,140 - ECD_00797 0.53 -1.2 854,145 + ECD_00797 0.53 -1.2 854,259 + ECD_00797 0.60 -0.3
Or see this region's nucleotide sequence