Strain Fitness in Escherichia coli BL21 around ECD_00787

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00786 and ECD_00787 are separated by 218 nucleotidesECD_00787 and ECD_00788 are separated by 167 nucleotides ECD_00786: ECD_00786 - L,D-transpeptidase linking Lpp to murein, at 838,816 to 839,736 _00786 ECD_00787: ECD_00787 - ABC-F family putative regulatory ATPase, at 839,955 to 841,547 _00787 ECD_00788: ECD_00788 - DUF1479 family protein, at 841,715 to 842,980 _00788 Position (kb) 839 840 841 842Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 838.992 kb on - strand, within ECD_00786at 838.992 kb on - strand, within ECD_00786at 839.120 kb on - strand, within ECD_00786at 839.165 kb on + strand, within ECD_00786at 839.181 kb on - strand, within ECD_00786at 839.189 kb on + strand, within ECD_00786at 839.190 kb on - strand, within ECD_00786at 839.190 kb on - strand, within ECD_00786at 839.332 kb on - strand, within ECD_00786at 839.337 kb on + strand, within ECD_00786at 839.337 kb on + strand, within ECD_00786at 839.403 kb on - strand, within ECD_00786at 839.403 kb on - strand, within ECD_00786at 839.406 kb on - strand, within ECD_00786at 839.491 kb on - strand, within ECD_00786at 839.574 kb on - strand, within ECD_00786at 839.593 kb on - strand, within ECD_00786at 839.658 kb on - strandat 839.663 kb on - strandat 839.779 kb on + strandat 839.802 kb on - strandat 839.803 kb on + strandat 839.804 kb on - strandat 839.909 kb on + strandat 840.072 kb on - strandat 840.083 kb on + strandat 840.155 kb on + strand, within ECD_00787at 840.296 kb on + strand, within ECD_00787at 840.296 kb on + strand, within ECD_00787at 840.317 kb on + strand, within ECD_00787at 840.317 kb on + strand, within ECD_00787at 840.611 kb on + strand, within ECD_00787at 840.663 kb on + strand, within ECD_00787at 840.664 kb on - strand, within ECD_00787at 840.672 kb on + strand, within ECD_00787at 840.672 kb on + strand, within ECD_00787at 840.672 kb on + strand, within ECD_00787at 840.673 kb on - strand, within ECD_00787at 840.890 kb on + strand, within ECD_00787at 840.890 kb on + strand, within ECD_00787at 841.081 kb on + strand, within ECD_00787at 841.113 kb on + strand, within ECD_00787at 841.113 kb on + strand, within ECD_00787at 841.113 kb on + strand, within ECD_00787at 841.131 kb on + strand, within ECD_00787at 841.529 kb on + strandat 841.545 kb on + strandat 841.685 kb on - strandat 842.111 kb on + strand, within ECD_00788at 842.112 kb on - strand, within ECD_00788at 842.117 kb on + strand, within ECD_00788at 842.122 kb on - strand, within ECD_00788at 842.245 kb on - strand, within ECD_00788at 842.287 kb on - strand, within ECD_00788

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
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838,992 - ECD_00786 0.19 -0.7
838,992 - ECD_00786 0.19 +0.4
839,120 - ECD_00786 0.33 +1.4
839,165 + ECD_00786 0.38 -2.1
839,181 - ECD_00786 0.40 +1.0
839,189 + ECD_00786 0.40 -0.8
839,190 - ECD_00786 0.41 +0.2
839,190 - ECD_00786 0.41 +0.2
839,332 - ECD_00786 0.56 -0.3
839,337 + ECD_00786 0.57 -0.9
839,337 + ECD_00786 0.57 -1.4
839,403 - ECD_00786 0.64 +0.0
839,403 - ECD_00786 0.64 -1.1
839,406 - ECD_00786 0.64 +0.6
839,491 - ECD_00786 0.73 +0.7
839,574 - ECD_00786 0.82 +0.0
839,593 - ECD_00786 0.84 +1.0
839,658 - +0.2
839,663 - +0.9
839,779 + -1.2
839,802 - -3.1
839,803 + -1.2
839,804 - -2.4
839,909 + +0.5
840,072 - -0.4
840,083 + +0.1
840,155 + ECD_00787 0.13 +0.4
840,296 + ECD_00787 0.21 +1.7
840,296 + ECD_00787 0.21 +0.1
840,317 + ECD_00787 0.23 +0.4
840,317 + ECD_00787 0.23 -0.6
840,611 + ECD_00787 0.41 +1.6
840,663 + ECD_00787 0.44 +1.5
840,664 - ECD_00787 0.45 -0.4
840,672 + ECD_00787 0.45 -0.2
840,672 + ECD_00787 0.45 -0.7
840,672 + ECD_00787 0.45 +0.6
840,673 - ECD_00787 0.45 +1.9
840,890 + ECD_00787 0.59 +0.4
840,890 + ECD_00787 0.59 +0.8
841,081 + ECD_00787 0.71 -0.0
841,113 + ECD_00787 0.73 +0.8
841,113 + ECD_00787 0.73 +1.1
841,113 + ECD_00787 0.73 +0.6
841,131 + ECD_00787 0.74 +1.1
841,529 + -0.3
841,545 + -0.5
841,685 - -1.0
842,111 + ECD_00788 0.31 -0.9
842,112 - ECD_00788 0.31 -0.3
842,117 + ECD_00788 0.32 -1.2
842,122 - ECD_00788 0.32 +0.0
842,245 - ECD_00788 0.42 +0.9
842,287 - ECD_00788 0.45 +0.4

Or see this region's nucleotide sequence