Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00776 and ECD_00777 overlap by 4 nucleotides ECD_00777 and ECD_00778 are separated by 138 nucleotides ECD_00778 and ECD_00779 are separated by 403 nucleotides
ECD_00776: ECD_00776 - glutamine transporter subunit, at 829,733 to 830,455
_00776
ECD_00777: ECD_00777 - glutamine transporter subunit, at 830,452 to 831,111
_00777
ECD_00778: ECD_00778 - glutamine transporter subunit, at 831,250 to 831,996
_00778
ECD_00779: ECD_00779 - Fe-binding and storage protein; stress-inducible DNA-binding protein, at 832,400 to 832,903
_00779
Position (kb) 831
832 Strain fitness (log2 ratio) -2
-1
0
1
2 at 830.512 kb on - strand at 830.520 kb on - strand, within ECD_00777 at 830.520 kb on - strand, within ECD_00777 at 830.673 kb on + strand, within ECD_00777 at 830.674 kb on - strand, within ECD_00777 at 830.674 kb on - strand, within ECD_00777 at 830.703 kb on - strand, within ECD_00777 at 830.766 kb on + strand, within ECD_00777 at 830.802 kb on - strand, within ECD_00777 at 830.802 kb on - strand, within ECD_00777 at 830.842 kb on - strand, within ECD_00777 at 830.858 kb on - strand, within ECD_00777 at 831.111 kb on + strand at 831.112 kb on - strand at 831.112 kb on - strand at 831.112 kb on - strand at 831.112 kb on - strand at 831.112 kb on - strand at 831.112 kb on - strand at 831.158 kb on + strand at 831.243 kb on - strand at 831.252 kb on - strand at 831.373 kb on - strand, within ECD_00778 at 831.378 kb on - strand, within ECD_00778 at 831.504 kb on - strand, within ECD_00778 at 831.563 kb on + strand, within ECD_00778 at 831.678 kb on - strand, within ECD_00778 at 831.706 kb on - strand, within ECD_00778 at 831.860 kb on + strand, within ECD_00778 at 831.860 kb on + strand, within ECD_00778 at 831.861 kb on - strand, within ECD_00778 at 831.861 kb on - strand, within ECD_00778 at 831.861 kb on - strand, within ECD_00778 at 831.861 kb on - strand, within ECD_00778 at 832.273 kb on + strand at 832.371 kb on - strand at 832.412 kb on - strand at 832.612 kb on + strand, within ECD_00779 at 832.635 kb on - strand, within ECD_00779 at 832.925 kb on + strand at 832.926 kb on - strand at 832.948 kb on + strand at 832.949 kb on - strand at 832.952 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1 remove 830,512 - +1.9 830,520 - ECD_00777 0.10 -0.0 830,520 - ECD_00777 0.10 -0.6 830,673 + ECD_00777 0.33 -1.1 830,674 - ECD_00777 0.34 -0.0 830,674 - ECD_00777 0.34 +0.2 830,703 - ECD_00777 0.38 +0.3 830,766 + ECD_00777 0.48 +0.1 830,802 - ECD_00777 0.53 +1.3 830,802 - ECD_00777 0.53 +0.2 830,842 - ECD_00777 0.59 +0.4 830,858 - ECD_00777 0.62 +0.4 831,111 + -0.9 831,112 - +2.1 831,112 - +0.9 831,112 - +1.4 831,112 - +2.3 831,112 - +0.7 831,112 - +0.7 831,158 + -2.0 831,243 - +0.1 831,252 - -1.5 831,373 - ECD_00778 0.16 -1.0 831,378 - ECD_00778 0.17 +0.7 831,504 - ECD_00778 0.34 -2.1 831,563 + ECD_00778 0.42 -1.4 831,678 - ECD_00778 0.57 +1.5 831,706 - ECD_00778 0.61 -0.4 831,860 + ECD_00778 0.82 -1.4 831,860 + ECD_00778 0.82 -0.5 831,861 - ECD_00778 0.82 +0.2 831,861 - ECD_00778 0.82 -1.6 831,861 - ECD_00778 0.82 +0.7 831,861 - ECD_00778 0.82 -0.9 832,273 + +0.1 832,371 - +1.1 832,412 - +0.3 832,612 + ECD_00779 0.42 -0.8 832,635 - ECD_00779 0.47 -0.4 832,925 + -0.3 832,926 - +1.7 832,948 + -2.0 832,949 - +0.2 832,952 + -0.2
Or see this region's nucleotide sequence