Strain Fitness in Escherichia coli BL21 around ECD_00686

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00685 and ECD_00686 are separated by 14 nucleotidesECD_00686 and ECD_00687 are separated by 365 nucleotides ECD_00685: ECD_00685 - 2-oxoglutarate decarboxylase, thiamine triphosphate-binding, at 717,276 to 720,077 _00685 ECD_00686: ECD_00686 - dihydrolipoyltranssuccinase, at 720,092 to 721,309 _00686 ECD_00687: ECD_00687 - succinyl-CoA synthetase, beta subunit, at 721,675 to 722,841 _00687 Position (kb) 720 721 722Strain fitness (log2 ratio) -1 0 1 2at 721.307 kb on + strandat 721.307 kb on + strandat 721.308 kb on - strandat 721.310 kb on + strandat 721.310 kb on + strandat 721.311 kb on - strandat 721.316 kb on - strandat 721.333 kb on + strandat 721.398 kb on - strandat 721.422 kb on + strandat 721.488 kb on - strandat 721.513 kb on + strandat 721.514 kb on - strandat 721.624 kb on - strandat 721.633 kb on - strandat 721.749 kb on + strandat 721.753 kb on - strandat 721.925 kb on - strand, within ECD_00687at 721.999 kb on + strand, within ECD_00687at 722.022 kb on + strand, within ECD_00687at 722.146 kb on + strand, within ECD_00687at 722.187 kb on + strand, within ECD_00687

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
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721,307 + +0.9
721,307 + -0.1
721,308 - -0.6
721,310 + +1.2
721,310 + +0.7
721,311 - +0.2
721,316 - -1.3
721,333 + +1.5
721,398 - +0.1
721,422 + +1.5
721,488 - +1.1
721,513 + +1.6
721,514 - -0.3
721,624 - -0.7
721,633 - -0.2
721,749 + +1.2
721,753 - -0.2
721,925 - ECD_00687 0.21 -0.8
721,999 + ECD_00687 0.28 +1.7
722,022 + ECD_00687 0.30 -0.3
722,146 + ECD_00687 0.40 +2.3
722,187 + ECD_00687 0.44 +0.3

Or see this region's nucleotide sequence