Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00666 and ECD_00667 are separated by 147 nucleotides ECD_00667 and ECD_00668 overlap by 4 nucleotides ECD_00668 and ECD_00669 are separated by 38 nucleotides
ECD_00666: ECD_00666 - H repeat-associated putative transposase, at 696,764 to 697,525
_00666
ECD_00667: ECD_00667 - DUF1722 family protein, at 697,673 to 698,182
_00667
ECD_00668: ECD_00668 - deoxyribodipyrimidine photolyase, FAD-binding, at 698,179 to 699,600
_00668
ECD_00669: ECD_00669 - dipeptide and tripeptide permease D, at 699,639 to 701,120
_00669
Position (kb) 698
699
700 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 697.645 kb on + strand at 697.732 kb on - strand, within ECD_00667 at 698.129 kb on + strand, within ECD_00667 at 698.280 kb on - strand at 698.281 kb on + strand at 698.282 kb on - strand at 698.284 kb on - strand at 698.284 kb on - strand at 698.364 kb on - strand, within ECD_00668 at 698.389 kb on - strand, within ECD_00668 at 698.442 kb on + strand, within ECD_00668 at 698.482 kb on + strand, within ECD_00668 at 698.483 kb on - strand, within ECD_00668 at 698.484 kb on + strand, within ECD_00668 at 698.489 kb on - strand, within ECD_00668 at 698.544 kb on + strand, within ECD_00668 at 698.640 kb on + strand, within ECD_00668 at 698.640 kb on + strand, within ECD_00668 at 698.739 kb on + strand, within ECD_00668 at 698.846 kb on - strand, within ECD_00668 at 698.997 kb on + strand, within ECD_00668 at 698.998 kb on - strand, within ECD_00668 at 699.040 kb on + strand, within ECD_00668 at 699.041 kb on - strand, within ECD_00668 at 699.041 kb on - strand, within ECD_00668 at 699.041 kb on - strand, within ECD_00668 at 699.571 kb on + strand at 699.618 kb on - strand at 699.748 kb on - strand at 699.755 kb on + strand at 699.755 kb on + strand at 699.756 kb on - strand at 699.756 kb on - strand at 699.758 kb on - strand at 699.772 kb on + strand at 699.773 kb on - strand at 699.838 kb on + strand, within ECD_00669 at 699.976 kb on - strand, within ECD_00669 at 699.978 kb on + strand, within ECD_00669 at 700.006 kb on + strand, within ECD_00669 at 700.006 kb on + strand, within ECD_00669 at 700.007 kb on - strand, within ECD_00669 at 700.007 kb on - strand, within ECD_00669 at 700.007 kb on - strand, within ECD_00669 at 700.126 kb on - strand, within ECD_00669 at 700.157 kb on + strand, within ECD_00669 at 700.203 kb on - strand, within ECD_00669 at 700.204 kb on + strand, within ECD_00669 at 700.205 kb on - strand, within ECD_00669 at 700.205 kb on - strand, within ECD_00669 at 700.214 kb on + strand, within ECD_00669 at 700.239 kb on - strand, within ECD_00669 at 700.248 kb on - strand, within ECD_00669 at 700.401 kb on + strand, within ECD_00669 at 700.539 kb on - strand, within ECD_00669
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1 remove 697,645 + -0.6 697,732 - ECD_00667 0.12 -1.3 698,129 + ECD_00667 0.89 +0.8 698,280 - -2.6 698,281 + -0.6 698,282 - -1.8 698,284 - -1.4 698,284 - -0.8 698,364 - ECD_00668 0.13 -2.1 698,389 - ECD_00668 0.15 -2.4 698,442 + ECD_00668 0.18 +0.5 698,482 + ECD_00668 0.21 +1.8 698,483 - ECD_00668 0.21 -2.8 698,484 + ECD_00668 0.21 -0.1 698,489 - ECD_00668 0.22 -0.9 698,544 + ECD_00668 0.26 -0.3 698,640 + ECD_00668 0.32 -0.9 698,640 + ECD_00668 0.32 -0.2 698,739 + ECD_00668 0.39 -0.7 698,846 - ECD_00668 0.47 -1.4 698,997 + ECD_00668 0.58 -0.5 698,998 - ECD_00668 0.58 -0.4 699,040 + ECD_00668 0.61 +0.0 699,041 - ECD_00668 0.61 -0.4 699,041 - ECD_00668 0.61 +0.3 699,041 - ECD_00668 0.61 -1.9 699,571 + +0.6 699,618 - -2.1 699,748 - -1.2 699,755 + +0.0 699,755 + +0.8 699,756 - +0.6 699,756 - -0.8 699,758 - -1.0 699,772 + -0.4 699,773 - -0.4 699,838 + ECD_00669 0.13 -1.4 699,976 - ECD_00669 0.23 -0.5 699,978 + ECD_00669 0.23 -1.4 700,006 + ECD_00669 0.25 -2.2 700,006 + ECD_00669 0.25 -0.6 700,007 - ECD_00669 0.25 +0.3 700,007 - ECD_00669 0.25 +0.1 700,007 - ECD_00669 0.25 +0.4 700,126 - ECD_00669 0.33 +0.1 700,157 + ECD_00669 0.35 -0.6 700,203 - ECD_00669 0.38 +0.8 700,204 + ECD_00669 0.38 -0.9 700,205 - ECD_00669 0.38 -0.3 700,205 - ECD_00669 0.38 -0.9 700,214 + ECD_00669 0.39 -0.9 700,239 - ECD_00669 0.40 +0.2 700,248 - ECD_00669 0.41 -1.0 700,401 + ECD_00669 0.51 -0.4 700,539 - ECD_00669 0.61 -0.2
Or see this region's nucleotide sequence