Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00621 and ECD_00622 overlap by 1 nucleotides ECD_00622 and ECD_00623 are separated by 169 nucleotides ECD_00623 and ECD_00624 are separated by 454 nucleotides
ECD_00621: ECD_00621 - glutamate/aspartate ABC transporter permease, at 644,266 to 644,940
_00621
ECD_00622: ECD_00622 - glutamate/aspartate ABC transporter permease, at 644,940 to 645,680
_00622
ECD_00623: ECD_00623 - glutamate/aspartate periplasmic binding protein, at 645,850 to 646,758
_00623
ECD_00624: ECD_00624 - hypothetical protein, at 647,213 to 649,090
_00624
Position (kb) 645
646
647 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 644.941 kb on + strand at 644.975 kb on + strand at 644.976 kb on - strand at 645.005 kb on + strand at 645.025 kb on + strand, within ECD_00622 at 645.025 kb on + strand, within ECD_00622 at 645.025 kb on + strand, within ECD_00622 at 645.025 kb on + strand, within ECD_00622 at 645.026 kb on - strand, within ECD_00622 at 645.208 kb on + strand, within ECD_00622 at 645.428 kb on - strand, within ECD_00622 at 645.479 kb on - strand, within ECD_00622 at 645.479 kb on - strand, within ECD_00622 at 645.522 kb on + strand, within ECD_00622 at 645.619 kb on + strand at 645.620 kb on - strand at 645.672 kb on + strand at 645.672 kb on + strand at 645.672 kb on + strand at 645.675 kb on - strand at 645.681 kb on - strand at 645.714 kb on + strand at 645.747 kb on - strand at 645.788 kb on - strand at 645.790 kb on - strand at 645.807 kb on + strand at 645.957 kb on + strand, within ECD_00623 at 646.041 kb on + strand, within ECD_00623 at 646.042 kb on - strand, within ECD_00623 at 646.050 kb on + strand, within ECD_00623 at 646.051 kb on - strand, within ECD_00623 at 646.051 kb on - strand, within ECD_00623 at 646.565 kb on + strand, within ECD_00623 at 646.592 kb on + strand, within ECD_00623 at 646.593 kb on - strand, within ECD_00623 at 646.666 kb on - strand, within ECD_00623 at 646.747 kb on - strand at 646.751 kb on - strand at 646.860 kb on - strand at 646.864 kb on - strand at 647.027 kb on - strand at 647.027 kb on - strand at 647.428 kb on + strand, within ECD_00624 at 647.590 kb on - strand, within ECD_00624 at 647.681 kb on - strand, within ECD_00624 at 647.697 kb on + strand, within ECD_00624 at 647.757 kb on + strand, within ECD_00624 at 647.757 kb on + strand, within ECD_00624
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1 remove 644,941 + +2.1 644,975 + -0.7 644,976 - -1.3 645,005 + +0.0 645,025 + ECD_00622 0.11 +0.6 645,025 + ECD_00622 0.11 -0.3 645,025 + ECD_00622 0.11 -0.0 645,025 + ECD_00622 0.11 -0.4 645,026 - ECD_00622 0.12 -0.7 645,208 + ECD_00622 0.36 -1.2 645,428 - ECD_00622 0.66 +1.5 645,479 - ECD_00622 0.73 -1.1 645,479 - ECD_00622 0.73 -0.9 645,522 + ECD_00622 0.79 -1.2 645,619 + -1.8 645,620 - -0.3 645,672 + +0.2 645,672 + +1.0 645,672 + +0.5 645,675 - -0.3 645,681 - -0.1 645,714 + -2.1 645,747 - +0.6 645,788 - -1.1 645,790 - +0.0 645,807 + -1.3 645,957 + ECD_00623 0.12 -2.2 646,041 + ECD_00623 0.21 -3.3 646,042 - ECD_00623 0.21 -0.7 646,050 + ECD_00623 0.22 -1.0 646,051 - ECD_00623 0.22 +0.1 646,051 - ECD_00623 0.22 +0.7 646,565 + ECD_00623 0.79 -1.3 646,592 + ECD_00623 0.82 +0.1 646,593 - ECD_00623 0.82 -1.0 646,666 - ECD_00623 0.90 -1.0 646,747 - +0.2 646,751 - -0.5 646,860 - +1.0 646,864 - +1.1 647,027 - -1.4 647,027 - -3.1 647,428 + ECD_00624 0.11 -1.3 647,590 - ECD_00624 0.20 -1.6 647,681 - ECD_00624 0.25 -1.4 647,697 + ECD_00624 0.26 -0.0 647,757 + ECD_00624 0.29 +1.0 647,757 + ECD_00624 0.29 +0.5
Or see this region's nucleotide sequence