Strain Fitness in Escherichia coli BL21 around ECD_00437

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00436 and ECD_00437 are separated by 2 nucleotidesECD_00437 and ECD_00438 are separated by 124 nucleotidesECD_00438 and ECD_00439 are separated by 0 nucleotidesECD_00439 and ECD_00440 overlap by 4 nucleotides ECD_00436: ECD_00436 - glutaminase 1, at 480,788 to 481,720 _00436 ECD_00437: ECD_00437 - putative amino acid transporter, at 481,723 to 483,015 _00437 ECD_00438: ECD_00438 - copper-responsive regulon transcriptional regulator, at 483,140 to 483,547 _00438 ECD_00439: ECD_00439 - inner membrane protein; stimulator of the QmcA suppressor of ftsH-htpX, at 483,548 to 484,006 _00439 ECD_00440: ECD_00440 - PHB domain membrane-anchored putative protease, at 484,003 to 484,920 _00440 Position (kb) 481 482 483 484Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 480.792 kb on + strandat 480.872 kb on + strandat 480.894 kb on + strand, within ECD_00436at 480.894 kb on + strand, within ECD_00436at 480.895 kb on - strand, within ECD_00436at 480.944 kb on + strand, within ECD_00436at 480.944 kb on + strand, within ECD_00436at 480.944 kb on + strand, within ECD_00436at 481.098 kb on + strand, within ECD_00436at 481.206 kb on + strand, within ECD_00436at 481.240 kb on - strand, within ECD_00436at 481.314 kb on - strand, within ECD_00436at 481.331 kb on + strand, within ECD_00436at 481.332 kb on - strand, within ECD_00436at 481.361 kb on + strand, within ECD_00436at 481.362 kb on - strand, within ECD_00436at 481.390 kb on + strand, within ECD_00436at 481.391 kb on - strand, within ECD_00436at 481.484 kb on + strand, within ECD_00436at 481.517 kb on + strand, within ECD_00436at 481.700 kb on + strandat 481.701 kb on - strandat 481.702 kb on + strandat 481.711 kb on + strandat 481.712 kb on - strandat 481.740 kb on + strandat 481.740 kb on + strandat 481.844 kb on + strandat 481.913 kb on - strand, within ECD_00437at 481.934 kb on - strand, within ECD_00437at 482.068 kb on + strand, within ECD_00437at 482.165 kb on + strand, within ECD_00437at 482.271 kb on + strand, within ECD_00437at 482.316 kb on + strand, within ECD_00437at 482.443 kb on + strand, within ECD_00437at 482.443 kb on + strand, within ECD_00437at 482.443 kb on + strand, within ECD_00437at 482.444 kb on - strand, within ECD_00437at 482.676 kb on + strand, within ECD_00437at 482.698 kb on - strand, within ECD_00437at 482.698 kb on - strand, within ECD_00437at 482.730 kb on + strand, within ECD_00437at 482.731 kb on - strand, within ECD_00437at 482.874 kb on + strand, within ECD_00437at 482.875 kb on - strand, within ECD_00437at 482.875 kb on - strand, within ECD_00437at 482.907 kb on + strandat 482.908 kb on - strandat 482.912 kb on - strandat 482.912 kb on - strandat 483.012 kb on - strandat 483.042 kb on + strandat 483.045 kb on + strandat 483.045 kb on + strandat 483.156 kb on + strandat 483.156 kb on + strandat 483.198 kb on - strand, within ECD_00438at 483.568 kb on + strandat 483.572 kb on + strandat 483.573 kb on - strandat 483.573 kb on - strandat 483.749 kb on - strand, within ECD_00439at 483.916 kb on - strand, within ECD_00439at 483.916 kb on - strand, within ECD_00439at 483.992 kb on + strandat 483.995 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
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480,792 + -0.7
480,872 + +1.1
480,894 + ECD_00436 0.11 -0.1
480,894 + ECD_00436 0.11 -0.4
480,895 - ECD_00436 0.11 -1.4
480,944 + ECD_00436 0.17 -0.1
480,944 + ECD_00436 0.17 -0.6
480,944 + ECD_00436 0.17 -0.1
481,098 + ECD_00436 0.33 -0.1
481,206 + ECD_00436 0.45 -1.3
481,240 - ECD_00436 0.48 -1.2
481,314 - ECD_00436 0.56 +0.3
481,331 + ECD_00436 0.58 +0.2
481,332 - ECD_00436 0.58 +0.4
481,361 + ECD_00436 0.61 +0.8
481,362 - ECD_00436 0.62 -0.8
481,390 + ECD_00436 0.65 +0.6
481,391 - ECD_00436 0.65 -0.5
481,484 + ECD_00436 0.75 +0.3
481,517 + ECD_00436 0.78 -0.0
481,700 + -0.2
481,701 - -1.1
481,702 + +1.0
481,711 + +0.7
481,712 - -3.1
481,740 + +0.9
481,740 + +0.2
481,844 + +0.5
481,913 - ECD_00437 0.15 -1.5
481,934 - ECD_00437 0.16 -0.8
482,068 + ECD_00437 0.27 -0.0
482,165 + ECD_00437 0.34 -1.5
482,271 + ECD_00437 0.42 -0.2
482,316 + ECD_00437 0.46 +0.4
482,443 + ECD_00437 0.56 -0.2
482,443 + ECD_00437 0.56 -0.2
482,443 + ECD_00437 0.56 +1.4
482,444 - ECD_00437 0.56 +0.9
482,676 + ECD_00437 0.74 -0.8
482,698 - ECD_00437 0.75 -1.0
482,698 - ECD_00437 0.75 -0.2
482,730 + ECD_00437 0.78 -0.2
482,731 - ECD_00437 0.78 -0.2
482,874 + ECD_00437 0.89 -0.8
482,875 - ECD_00437 0.89 +1.2
482,875 - ECD_00437 0.89 -0.4
482,907 + +2.5
482,908 - +0.9
482,912 - -2.1
482,912 - -0.3
483,012 - -1.6
483,042 + -1.0
483,045 + -0.7
483,045 + +1.1
483,156 + +0.6
483,156 + +0.4
483,198 - ECD_00438 0.14 -0.9
483,568 + +0.1
483,572 + -3.2
483,573 - +0.0
483,573 - -0.2
483,749 - ECD_00439 0.44 -1.6
483,916 - ECD_00439 0.80 -0.1
483,916 - ECD_00439 0.80 -1.7
483,992 + -2.1
483,995 + -2.4

Or see this region's nucleotide sequence