Strain Fitness in Escherichia coli BL21 around ECD_00350

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00349 and ECD_00350 are separated by 75 nucleotidesECD_00350 and ECD_00351 are separated by 155 nucleotides ECD_00349: ECD_00349 - branched-chain amino acid transport system 2 carrier protein; LIV-II transport system for Ile, Leu, and Val, at 384,993 to 386,312 _00349 ECD_00350: ECD_00350 - proline-specific permease, at 386,388 to 387,761 _00350 ECD_00351: ECD_00351 - maltodextrin glucosidase, at 387,917 to 389,734 _00351 Position (kb) 386 387 388Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 385.511 kb on + strand, within ECD_00349at 385.511 kb on + strand, within ECD_00349at 385.512 kb on - strand, within ECD_00349at 385.586 kb on + strand, within ECD_00349at 385.616 kb on + strand, within ECD_00349at 385.671 kb on + strand, within ECD_00349at 385.671 kb on + strand, within ECD_00349at 385.672 kb on - strand, within ECD_00349at 385.673 kb on + strand, within ECD_00349at 385.674 kb on - strand, within ECD_00349at 385.917 kb on + strand, within ECD_00349at 385.917 kb on + strand, within ECD_00349at 385.937 kb on + strand, within ECD_00349at 386.034 kb on + strand, within ECD_00349at 386.046 kb on - strand, within ECD_00349at 386.060 kb on - strand, within ECD_00349at 386.087 kb on + strand, within ECD_00349at 386.087 kb on + strand, within ECD_00349at 386.088 kb on - strand, within ECD_00349at 386.175 kb on - strand, within ECD_00349at 386.179 kb on + strand, within ECD_00349at 386.264 kb on + strandat 386.363 kb on + strandat 386.396 kb on + strandat 386.396 kb on + strandat 386.407 kb on + strandat 386.434 kb on + strandat 386.434 kb on + strandat 386.435 kb on - strandat 386.532 kb on - strand, within ECD_00350at 386.535 kb on - strand, within ECD_00350at 386.553 kb on + strand, within ECD_00350at 386.554 kb on - strand, within ECD_00350at 386.555 kb on + strand, within ECD_00350at 386.556 kb on - strand, within ECD_00350at 386.556 kb on - strand, within ECD_00350at 386.561 kb on + strand, within ECD_00350at 386.588 kb on - strand, within ECD_00350at 386.652 kb on + strand, within ECD_00350at 386.670 kb on + strand, within ECD_00350at 386.720 kb on + strand, within ECD_00350at 386.724 kb on + strand, within ECD_00350at 386.724 kb on + strand, within ECD_00350at 386.724 kb on + strand, within ECD_00350at 386.724 kb on + strand, within ECD_00350at 386.724 kb on + strand, within ECD_00350at 386.724 kb on + strand, within ECD_00350at 386.724 kb on + strand, within ECD_00350at 386.724 kb on + strand, within ECD_00350at 386.724 kb on + strand, within ECD_00350at 386.724 kb on + strand, within ECD_00350at 386.725 kb on - strand, within ECD_00350at 386.725 kb on - strand, within ECD_00350at 386.725 kb on - strand, within ECD_00350at 386.725 kb on - strand, within ECD_00350at 386.725 kb on - strand, within ECD_00350at 386.725 kb on - strand, within ECD_00350at 386.727 kb on - strand, within ECD_00350at 386.819 kb on - strand, within ECD_00350at 386.942 kb on + strand, within ECD_00350at 386.992 kb on + strand, within ECD_00350at 387.095 kb on + strand, within ECD_00350at 387.113 kb on + strand, within ECD_00350at 387.126 kb on + strand, within ECD_00350at 387.149 kb on + strand, within ECD_00350at 387.149 kb on + strand, within ECD_00350at 387.150 kb on - strand, within ECD_00350at 387.155 kb on + strand, within ECD_00350at 387.155 kb on + strand, within ECD_00350at 387.160 kb on - strand, within ECD_00350at 387.215 kb on + strand, within ECD_00350at 387.224 kb on + strand, within ECD_00350at 387.281 kb on + strand, within ECD_00350at 387.281 kb on + strand, within ECD_00350at 387.292 kb on + strand, within ECD_00350at 387.292 kb on + strand, within ECD_00350at 387.292 kb on + strand, within ECD_00350at 387.293 kb on - strand, within ECD_00350at 387.302 kb on - strand, within ECD_00350at 387.320 kb on + strand, within ECD_00350at 387.426 kb on + strand, within ECD_00350at 387.426 kb on + strand, within ECD_00350at 387.426 kb on + strand, within ECD_00350at 387.427 kb on - strand, within ECD_00350at 387.435 kb on + strand, within ECD_00350at 387.436 kb on - strand, within ECD_00350at 387.665 kb on + strandat 387.675 kb on + strandat 387.722 kb on + strandat 387.762 kb on + strandat 387.762 kb on + strandat 387.762 kb on + strandat 387.846 kb on + strandat 387.875 kb on + strandat 387.916 kb on + strandat 387.917 kb on - strandat 387.984 kb on + strandat 387.984 kb on + strandat 387.984 kb on + strandat 387.985 kb on - strandat 388.024 kb on + strandat 388.025 kb on - strandat 388.063 kb on - strandat 388.358 kb on + strand, within ECD_00351at 388.358 kb on + strand, within ECD_00351at 388.359 kb on - strand, within ECD_00351at 388.362 kb on - strand, within ECD_00351at 388.442 kb on + strand, within ECD_00351at 388.443 kb on - strand, within ECD_00351at 388.443 kb on - strand, within ECD_00351at 388.542 kb on + strand, within ECD_00351at 388.542 kb on + strand, within ECD_00351at 388.542 kb on + strand, within ECD_00351at 388.546 kb on + strand, within ECD_00351at 388.546 kb on + strand, within ECD_00351at 388.547 kb on - strand, within ECD_00351at 388.551 kb on - strand, within ECD_00351at 388.625 kb on - strand, within ECD_00351at 388.667 kb on - strand, within ECD_00351at 388.761 kb on - strand, within ECD_00351

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
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385,511 + ECD_00349 0.39 -0.3
385,511 + ECD_00349 0.39 +1.0
385,512 - ECD_00349 0.39 -1.1
385,586 + ECD_00349 0.45 +0.5
385,616 + ECD_00349 0.47 -0.2
385,671 + ECD_00349 0.51 +0.6
385,671 + ECD_00349 0.51 +0.9
385,672 - ECD_00349 0.51 -2.0
385,673 + ECD_00349 0.52 +1.1
385,674 - ECD_00349 0.52 -4.2
385,917 + ECD_00349 0.70 -0.2
385,917 + ECD_00349 0.70 +0.0
385,937 + ECD_00349 0.72 +0.3
386,034 + ECD_00349 0.79 +1.5
386,046 - ECD_00349 0.80 -1.2
386,060 - ECD_00349 0.81 -2.0
386,087 + ECD_00349 0.83 -0.1
386,087 + ECD_00349 0.83 +1.0
386,088 - ECD_00349 0.83 -1.1
386,175 - ECD_00349 0.90 -1.3
386,179 + ECD_00349 0.90 -0.7
386,264 + +0.5
386,363 + +1.6
386,396 + -0.4
386,396 + -0.2
386,407 + -1.2
386,434 + -0.5
386,434 + +0.1
386,435 - +0.3
386,532 - ECD_00350 0.10 -1.3
386,535 - ECD_00350 0.11 -0.0
386,553 + ECD_00350 0.12 -0.6
386,554 - ECD_00350 0.12 -1.5
386,555 + ECD_00350 0.12 +1.1
386,556 - ECD_00350 0.12 -0.4
386,556 - ECD_00350 0.12 -0.3
386,561 + ECD_00350 0.13 +0.7
386,588 - ECD_00350 0.15 -0.3
386,652 + ECD_00350 0.19 -0.7
386,670 + ECD_00350 0.21 -0.8
386,720 + ECD_00350 0.24 +0.4
386,724 + ECD_00350 0.24 +0.6
386,724 + ECD_00350 0.24 +0.9
386,724 + ECD_00350 0.24 -0.5
386,724 + ECD_00350 0.24 +0.9
386,724 + ECD_00350 0.24 +0.6
386,724 + ECD_00350 0.24 +0.2
386,724 + ECD_00350 0.24 -0.9
386,724 + ECD_00350 0.24 -0.5
386,724 + ECD_00350 0.24 -0.2
386,724 + ECD_00350 0.24 -0.0
386,725 - ECD_00350 0.25 -2.3
386,725 - ECD_00350 0.25 -1.4
386,725 - ECD_00350 0.25 +1.1
386,725 - ECD_00350 0.25 -0.1
386,725 - ECD_00350 0.25 -1.6
386,725 - ECD_00350 0.25 -0.4
386,727 - ECD_00350 0.25 -0.9
386,819 - ECD_00350 0.31 -2.9
386,942 + ECD_00350 0.40 -0.3
386,992 + ECD_00350 0.44 -0.4
387,095 + ECD_00350 0.51 +1.1
387,113 + ECD_00350 0.53 -0.2
387,126 + ECD_00350 0.54 +0.5
387,149 + ECD_00350 0.55 +0.1
387,149 + ECD_00350 0.55 +0.5
387,150 - ECD_00350 0.55 -2.4
387,155 + ECD_00350 0.56 +0.1
387,155 + ECD_00350 0.56 +0.0
387,160 - ECD_00350 0.56 -1.1
387,215 + ECD_00350 0.60 -0.5
387,224 + ECD_00350 0.61 -0.1
387,281 + ECD_00350 0.65 +1.5
387,281 + ECD_00350 0.65 -0.4
387,292 + ECD_00350 0.66 -0.0
387,292 + ECD_00350 0.66 -0.4
387,292 + ECD_00350 0.66 -0.9
387,293 - ECD_00350 0.66 +0.2
387,302 - ECD_00350 0.67 -1.2
387,320 + ECD_00350 0.68 +0.1
387,426 + ECD_00350 0.76 -1.5
387,426 + ECD_00350 0.76 +0.6
387,426 + ECD_00350 0.76 -0.5
387,427 - ECD_00350 0.76 -2.6
387,435 + ECD_00350 0.76 -0.1
387,436 - ECD_00350 0.76 -0.7
387,665 + -0.6
387,675 + -0.6
387,722 + -0.4
387,762 + +0.6
387,762 + +0.3
387,762 + +0.3
387,846 + +0.0
387,875 + +0.2
387,916 + -0.1
387,917 - -0.7
387,984 + -0.1
387,984 + -0.1
387,984 + -0.4
387,985 - +0.9
388,024 + -0.8
388,025 - +0.1
388,063 - -0.9
388,358 + ECD_00351 0.24 -2.0
388,358 + ECD_00351 0.24 +0.1
388,359 - ECD_00351 0.24 +0.1
388,362 - ECD_00351 0.24 -0.0
388,442 + ECD_00351 0.29 -0.6
388,443 - ECD_00351 0.29 +0.7
388,443 - ECD_00351 0.29 +0.0
388,542 + ECD_00351 0.34 -0.6
388,542 + ECD_00351 0.34 -0.1
388,542 + ECD_00351 0.34 +0.7
388,546 + ECD_00351 0.35 -0.5
388,546 + ECD_00351 0.35 -0.6
388,547 - ECD_00351 0.35 +0.1
388,551 - ECD_00351 0.35 +0.7
388,625 - ECD_00351 0.39 -0.2
388,667 - ECD_00351 0.41 -0.2
388,761 - ECD_00351 0.46 -0.2

Or see this region's nucleotide sequence