Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00301 and ECD_00302 are separated by 1 nucleotides ECD_00302 and ECD_00303 are separated by 17 nucleotides ECD_00303 and ECD_00304 are separated by 9 nucleotides
ECD_00301: ECD_00301 - 3-(3-hydroxyphenyl)propionate hydroxylase, at 338,146 to 339,810
_00301
ECD_00302: ECD_00302 - 2,3-dihydroxyphenylpropionate 1,2-dioxygenase, at 339,812 to 340,756
_00302
ECD_00303: ECD_00303 - 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase, at 340,774 to 341,640
_00303
ECD_00304: ECD_00304 - 2-keto-4-pentenoate hydratase, at 341,650 to 342,459
_00304
Position (kb) 339
340
341 Strain fitness (log2 ratio) -2
-1
0
1 at 338.837 kb on + strand, within ECD_00301 at 338.853 kb on + strand, within ECD_00301 at 338.968 kb on + strand, within ECD_00301 at 338.969 kb on - strand, within ECD_00301 at 339.093 kb on + strand, within ECD_00301 at 339.157 kb on + strand, within ECD_00301 at 339.158 kb on - strand, within ECD_00301 at 339.158 kb on - strand, within ECD_00301 at 339.249 kb on + strand, within ECD_00301 at 339.254 kb on + strand, within ECD_00301 at 339.254 kb on + strand, within ECD_00301 at 339.255 kb on - strand, within ECD_00301 at 339.255 kb on - strand, within ECD_00301 at 339.255 kb on - strand, within ECD_00301 at 339.283 kb on + strand, within ECD_00301 at 339.304 kb on + strand, within ECD_00301 at 339.402 kb on + strand, within ECD_00301 at 339.611 kb on + strand, within ECD_00301 at 339.663 kb on + strand at 339.663 kb on + strand at 339.663 kb on + strand at 339.663 kb on + strand at 339.664 kb on - strand at 339.735 kb on + strand at 339.735 kb on + strand at 339.735 kb on + strand at 339.736 kb on - strand at 339.822 kb on - strand at 339.858 kb on - strand at 339.879 kb on + strand at 339.971 kb on + strand, within ECD_00302 at 339.971 kb on + strand, within ECD_00302 at 339.987 kb on - strand, within ECD_00302 at 340.141 kb on + strand, within ECD_00302 at 340.141 kb on + strand, within ECD_00302 at 340.141 kb on + strand, within ECD_00302 at 340.142 kb on - strand, within ECD_00302 at 340.142 kb on - strand, within ECD_00302 at 340.462 kb on + strand, within ECD_00302 at 340.824 kb on - strand at 341.025 kb on + strand, within ECD_00303 at 341.127 kb on + strand, within ECD_00303 at 341.235 kb on + strand, within ECD_00303 at 341.238 kb on + strand, within ECD_00303 at 341.239 kb on - strand, within ECD_00303 at 341.410 kb on - strand, within ECD_00303 at 341.554 kb on - strand at 341.661 kb on + strand at 341.661 kb on + strand at 341.661 kb on + strand at 341.661 kb on + strand at 341.662 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1 remove 338,837 + ECD_00301 0.42 -0.0 338,853 + ECD_00301 0.42 +0.3 338,968 + ECD_00301 0.49 -0.2 338,969 - ECD_00301 0.49 -1.0 339,093 + ECD_00301 0.57 -0.5 339,157 + ECD_00301 0.61 +0.0 339,158 - ECD_00301 0.61 -2.1 339,158 - ECD_00301 0.61 -1.0 339,249 + ECD_00301 0.66 -0.2 339,254 + ECD_00301 0.67 +0.9 339,254 + ECD_00301 0.67 +0.3 339,255 - ECD_00301 0.67 -0.6 339,255 - ECD_00301 0.67 -0.2 339,255 - ECD_00301 0.67 +0.7 339,283 + ECD_00301 0.68 -0.6 339,304 + ECD_00301 0.70 +0.2 339,402 + ECD_00301 0.75 +0.3 339,611 + ECD_00301 0.88 -0.8 339,663 + -0.1 339,663 + -0.0 339,663 + -0.1 339,663 + -0.2 339,664 - -0.4 339,735 + +0.1 339,735 + -0.0 339,735 + +1.3 339,736 - -0.1 339,822 - -0.3 339,858 - +0.1 339,879 + +0.8 339,971 + ECD_00302 0.17 -0.3 339,971 + ECD_00302 0.17 +0.8 339,987 - ECD_00302 0.19 -0.3 340,141 + ECD_00302 0.35 -0.5 340,141 + ECD_00302 0.35 +0.5 340,141 + ECD_00302 0.35 +0.8 340,142 - ECD_00302 0.35 -1.0 340,142 - ECD_00302 0.35 -1.5 340,462 + ECD_00302 0.69 -0.5 340,824 - -2.3 341,025 + ECD_00303 0.29 -0.3 341,127 + ECD_00303 0.41 -0.9 341,235 + ECD_00303 0.53 -1.5 341,238 + ECD_00303 0.54 -0.3 341,239 - ECD_00303 0.54 -0.3 341,410 - ECD_00303 0.73 -2.1 341,554 - +0.1 341,661 + +0.4 341,661 + -2.2 341,661 + -0.7 341,661 + -0.6 341,662 - -0.9
Or see this region's nucleotide sequence