Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00271 and ECD_00272 are separated by 41 nucleotides ECD_00272 and ECD_00273 are separated by 91 nucleotides ECD_00273 and ECD_00274 are separated by 257 nucleotides
ECD_00271: ECD_00271 - c-di-GMP-specific phosphodiesterase, at 301,999 to 303,087
_00271
ECD_00272: ECD_00272 - putative DNA-bindng transcriptional regulator, at 303,129 to 304,061
_00272
ECD_00273: ECD_00273 - putative inner membrane protein, at 304,153 to 304,650
_00273
ECD_00274: ECD_00274 - ankyrin repeat protein, at 304,908 to 305,513
_00274
Position (kb) 303
304
305 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 302.133 kb on - strand, within ECD_00271 at 302.218 kb on - strand, within ECD_00271 at 302.290 kb on + strand, within ECD_00271 at 302.655 kb on + strand, within ECD_00271 at 302.769 kb on + strand, within ECD_00271 at 302.810 kb on - strand, within ECD_00271 at 302.810 kb on - strand, within ECD_00271 at 302.815 kb on + strand, within ECD_00271 at 302.911 kb on - strand, within ECD_00271 at 302.929 kb on - strand, within ECD_00271 at 303.243 kb on + strand, within ECD_00272 at 303.244 kb on - strand, within ECD_00272 at 303.462 kb on - strand, within ECD_00272 at 303.464 kb on + strand, within ECD_00272 at 303.465 kb on - strand, within ECD_00272 at 303.467 kb on + strand, within ECD_00272 at 303.571 kb on + strand, within ECD_00272 at 303.572 kb on - strand, within ECD_00272 at 303.632 kb on + strand, within ECD_00272 at 303.783 kb on + strand, within ECD_00272 at 303.784 kb on - strand, within ECD_00272 at 303.784 kb on - strand, within ECD_00272 at 303.797 kb on + strand, within ECD_00272 at 303.935 kb on + strand, within ECD_00272 at 303.949 kb on + strand, within ECD_00272 at 303.950 kb on - strand, within ECD_00272 at 303.950 kb on - strand, within ECD_00272 at 303.950 kb on - strand, within ECD_00272 at 303.950 kb on - strand, within ECD_00272 at 304.103 kb on - strand at 304.348 kb on + strand, within ECD_00273 at 304.371 kb on + strand, within ECD_00273 at 304.406 kb on - strand, within ECD_00273 at 304.406 kb on - strand, within ECD_00273 at 304.690 kb on + strand at 304.691 kb on - strand at 304.691 kb on - strand at 304.704 kb on - strand at 304.705 kb on + strand at 304.935 kb on + strand at 305.006 kb on + strand, within ECD_00274
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1 remove 302,133 - ECD_00271 0.12 -0.5 302,218 - ECD_00271 0.20 -0.7 302,290 + ECD_00271 0.27 -0.6 302,655 + ECD_00271 0.60 -0.8 302,769 + ECD_00271 0.71 -0.2 302,810 - ECD_00271 0.74 -0.5 302,810 - ECD_00271 0.74 -2.3 302,815 + ECD_00271 0.75 +0.4 302,911 - ECD_00271 0.84 -1.8 302,929 - ECD_00271 0.85 -0.1 303,243 + ECD_00272 0.12 -2.9 303,244 - ECD_00272 0.12 +0.0 303,462 - ECD_00272 0.36 -1.5 303,464 + ECD_00272 0.36 -0.8 303,465 - ECD_00272 0.36 -0.3 303,467 + ECD_00272 0.36 +0.5 303,571 + ECD_00272 0.47 -1.1 303,572 - ECD_00272 0.47 +0.4 303,632 + ECD_00272 0.54 -0.8 303,783 + ECD_00272 0.70 -0.3 303,784 - ECD_00272 0.70 -1.0 303,784 - ECD_00272 0.70 -2.1 303,797 + ECD_00272 0.72 +0.3 303,935 + ECD_00272 0.86 -1.0 303,949 + ECD_00272 0.88 -0.9 303,950 - ECD_00272 0.88 -1.0 303,950 - ECD_00272 0.88 -2.2 303,950 - ECD_00272 0.88 -0.1 303,950 - ECD_00272 0.88 -1.3 304,103 - -0.9 304,348 + ECD_00273 0.39 -2.3 304,371 + ECD_00273 0.44 -1.4 304,406 - ECD_00273 0.51 -1.1 304,406 - ECD_00273 0.51 -0.3 304,690 + -1.9 304,691 - -0.6 304,691 - -0.3 304,704 - -0.4 304,705 + +1.0 304,935 + -1.9 305,006 + ECD_00274 0.16 -1.8
Or see this region's nucleotide sequence