Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00037 and ECD_00038 are separated by 261 nucleotides ECD_00038 and ECD_00039 are separated by 208 nucleotides ECD_00039 and ECD_00040 are separated by 5 nucleotides ECD_00040 and ECD_00041 are separated by 0 nucleotides
ECD_00037: ECD_00037 - carbamoyl-phosphate synthase large subunit, at 34,889 to 38,110
_00037
ECD_00038: ECD_00038 - cai operon transcriptional activator, at 38,372 to 38,767
_00038
ECD_00039: ECD_00039 - stimulator of CaiD and CaiB enzyme activities, at 38,976 to 39,566
_00039
ECD_00040: ECD_00040 - carnitinyl-CoA dehydratase, at 39,572 to 40,465
_00040
ECD_00041: ECD_00041 - putative crotonobetaine/carnitine-CoA ligase, at 40,466 to 42,019
_00041
Position (kb) 38
39
40 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 37.994 kb on + strand at 37.995 kb on - strand at 37.996 kb on + strand at 37.996 kb on + strand at 37.996 kb on + strand at 37.996 kb on + strand at 37.996 kb on + strand at 37.997 kb on - strand at 37.997 kb on - strand at 38.109 kb on - strand at 38.237 kb on + strand at 38.237 kb on + strand at 38.237 kb on + strand at 38.278 kb on + strand at 38.279 kb on - strand at 38.338 kb on - strand at 38.349 kb on + strand at 38.371 kb on + strand at 38.500 kb on + strand, within ECD_00038 at 38.510 kb on + strand, within ECD_00038 at 38.510 kb on + strand, within ECD_00038 at 38.511 kb on - strand, within ECD_00038 at 38.511 kb on - strand, within ECD_00038 at 38.512 kb on + strand, within ECD_00038 at 38.548 kb on + strand, within ECD_00038 at 38.560 kb on + strand, within ECD_00038 at 38.561 kb on - strand, within ECD_00038 at 38.647 kb on + strand, within ECD_00038 at 38.648 kb on - strand, within ECD_00038 at 38.755 kb on + strand at 38.755 kb on + strand at 38.756 kb on - strand at 38.756 kb on - strand at 38.922 kb on + strand at 38.958 kb on - strand at 39.135 kb on - strand, within ECD_00039 at 39.145 kb on - strand, within ECD_00039 at 39.257 kb on + strand, within ECD_00039 at 39.258 kb on - strand, within ECD_00039 at 39.378 kb on - strand, within ECD_00039 at 39.460 kb on + strand, within ECD_00039 at 39.460 kb on + strand, within ECD_00039 at 39.461 kb on - strand, within ECD_00039 at 39.556 kb on + strand at 39.559 kb on + strand at 39.559 kb on + strand at 39.560 kb on - strand at 39.560 kb on - strand at 39.658 kb on - strand at 39.682 kb on + strand, within ECD_00040 at 39.684 kb on + strand, within ECD_00040 at 39.726 kb on + strand, within ECD_00040 at 39.727 kb on - strand, within ECD_00040 at 39.727 kb on - strand, within ECD_00040 at 39.767 kb on - strand, within ECD_00040 at 40.067 kb on - strand, within ECD_00040 at 40.217 kb on + strand, within ECD_00040 at 40.248 kb on - strand, within ECD_00040 at 40.468 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1 remove 37,994 + +0.3 37,995 - -0.5 37,996 + +0.2 37,996 + +0.1 37,996 + +1.2 37,996 + +1.1 37,996 + +0.5 37,997 - -2.0 37,997 - -1.5 38,109 - -0.4 38,237 + +0.5 38,237 + +0.4 38,237 + -0.8 38,278 + -1.2 38,279 - -0.1 38,338 - -0.7 38,349 + -0.1 38,371 + -0.6 38,500 + ECD_00038 0.32 -1.4 38,510 + ECD_00038 0.35 -0.3 38,510 + ECD_00038 0.35 -0.8 38,511 - ECD_00038 0.35 -1.4 38,511 - ECD_00038 0.35 -0.5 38,512 + ECD_00038 0.35 -0.1 38,548 + ECD_00038 0.44 -1.0 38,560 + ECD_00038 0.47 +0.1 38,561 - ECD_00038 0.48 -0.1 38,647 + ECD_00038 0.69 +0.7 38,648 - ECD_00038 0.70 -2.0 38,755 + +0.1 38,755 + +1.2 38,756 - -0.2 38,756 - -0.6 38,922 + -0.5 38,958 - -0.7 39,135 - ECD_00039 0.27 +0.6 39,145 - ECD_00039 0.29 -0.2 39,257 + ECD_00039 0.48 -0.2 39,258 - ECD_00039 0.48 +1.6 39,378 - ECD_00039 0.68 +0.3 39,460 + ECD_00039 0.82 -2.1 39,460 + ECD_00039 0.82 -3.2 39,461 - ECD_00039 0.82 +0.0 39,556 + -2.3 39,559 + -0.6 39,559 + +0.2 39,560 - +0.4 39,560 - -0.9 39,658 - +0.1 39,682 + ECD_00040 0.12 +0.0 39,684 + ECD_00040 0.13 -0.9 39,726 + ECD_00040 0.17 +0.6 39,727 - ECD_00040 0.17 +0.5 39,727 - ECD_00040 0.17 +0.1 39,767 - ECD_00040 0.22 +1.4 40,067 - ECD_00040 0.55 +0.1 40,217 + ECD_00040 0.72 -1.0 40,248 - ECD_00040 0.76 -0.8 40,468 - +0.4
Or see this region's nucleotide sequence