Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00028 and ECD_00029 are separated by 7 nucleotides ECD_00029 and ECD_00030 are separated by 42 nucleotides ECD_00030 and ECD_00031 overlap by 1 nucleotides ECD_00031 and ECD_00032 are separated by 124 nucleotides
ECD_00028: ECD_00028 - uncharacterized protein, at 25,253 to 25,471
_00028
ECD_00029: ECD_00029 - bifunctional riboflavin kinase/FAD synthetase, at 25,479 to 26,420
_00029
ECD_00030: ECD_00030 - isoleucyl-tRNA synthetase, at 26,463 to 29,279
_00030
ECD_00031: ECD_00031 - prolipoprotein signal peptidase (signal peptidase II), at 29,279 to 29,773
_00031
ECD_00032: ECD_00032 - FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase), at 29,898 to 30,347
_00032
Position (kb) 26
27
28
29
30 Strain fitness (log2 ratio) -1
0
1
2 at 26.427 kb on + strand at 26.427 kb on + strand at 29.755 kb on + strand at 29.771 kb on + strand at 29.774 kb on + strand at 29.774 kb on + strand at 29.853 kb on + strand at 29.881 kb on + strand at 30.138 kb on + strand, within ECD_00032 at 30.138 kb on + strand, within ECD_00032
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1 remove 26,427 + +1.1 26,427 + +1.0 29,755 + +0.7 29,771 + +0.3 29,774 + +0.9 29,774 + +0.8 29,853 + -0.1 29,881 + +0.3 30,138 + ECD_00032 0.53 +0.5 30,138 + ECD_00032 0.53 +2.1
Or see this region's nucleotide sequence