Strain Fitness in Escherichia coli BW25113 around b0680
Experiment: limonene 2.5 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | limonene 2.5 vol% |
---|---|---|---|---|---|
remove | |||||
704,356 | + | nagE | b0679 | 0.61 | +0.9 |
704,464 | - | nagE | b0679 | 0.67 | +1.6 |
704,500 | - | nagE | b0679 | 0.68 | -0.3 |
704,513 | - | nagE | b0679 | 0.69 | +1.4 |
704,513 | - | nagE | b0679 | 0.69 | +0.8 |
704,532 | + | nagE | b0679 | 0.70 | -0.3 |
704,648 | - | nagE | b0679 | 0.76 | +0.2 |
704,648 | - | nagE | b0679 | 0.76 | -0.0 |
704,648 | - | nagE | b0679 | 0.76 | -1.0 |
704,686 | - | nagE | b0679 | 0.78 | +0.7 |
704,726 | + | nagE | b0679 | 0.80 | -0.1 |
704,787 | - | nagE | b0679 | 0.83 | +0.3 |
704,800 | - | nagE | b0679 | 0.84 | +1.3 |
704,876 | + | nagE | b0679 | 0.88 | -0.2 |
704,876 | + | nagE | b0679 | 0.88 | +0.4 |
704,922 | + | -0.1 | |||
704,942 | - | +0.2 | |||
705,090 | - | +1.6 | |||
705,090 | - | -0.8 | |||
705,257 | - | +0.0 | |||
705,281 | + | +0.2 | |||
705,302 | + | +2.7 | |||
706,950 | + | +0.2 | |||
706,950 | + | +0.8 | |||
707,325 | - | +1.2 | |||
707,325 | - | -0.8 | |||
707,356 | - | -0.2 | |||
707,356 | - | +0.2 | |||
707,456 | + | -0.3 | |||
707,546 | - | +0.1 | |||
707,566 | - | +0.5 | |||
707,566 | - | -0.1 | |||
707,664 | - | +0.1 | |||
707,834 | + | ybfM | b0681 | 0.20 | +0.4 |
707,917 | + | ybfM | b0681 | 0.26 | +0.3 |
707,945 | + | ybfM | b0681 | 0.28 | -0.5 |
Or see this region's nucleotide sequence