Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3237

Experiment: LB_plus_SM_buffer with EIP30_phage 0.0000875 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3236 and GFF3237 are separated by 165 nucleotidesGFF3237 and GFF3238 overlap by 4 nucleotides GFF3236 - Dihydroorotate dehydrogenase (EC 1.3.3.1), at 8,827 to 9,837 GFF3236 GFF3237 - hypothetical protein, at 10,003 to 10,545 GFF3237 GFF3238 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1, at 10,542 to 11,651 GFF3238 Position (kb) 10 11Strain fitness (log2 ratio) -2 -1 0 1at 9.048 kb on - strand, within GFF3236at 9.171 kb on + strand, within GFF3236at 9.229 kb on - strand, within GFF3236at 9.328 kb on + strand, within GFF3236at 9.408 kb on - strand, within GFF3236at 9.453 kb on + strand, within GFF3236at 9.454 kb on - strand, within GFF3236at 9.457 kb on + strand, within GFF3236at 9.457 kb on + strand, within GFF3236at 9.645 kb on - strand, within GFF3236at 10.002 kb on - strandat 10.083 kb on + strand, within GFF3237at 10.442 kb on + strand, within GFF3237at 10.729 kb on - strand, within GFF3238at 10.780 kb on - strand, within GFF3238at 10.837 kb on + strand, within GFF3238at 11.093 kb on + strand, within GFF3238at 11.094 kb on - strand, within GFF3238at 11.154 kb on + strand, within GFF3238at 11.209 kb on - strand, within GFF3238at 11.249 kb on + strand, within GFF3238at 11.250 kb on - strand, within GFF3238at 11.430 kb on - strand, within GFF3238

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with EIP30_phage 0.0000875 MOI
remove
9,048 - GFF3236 0.22 -0.1
9,171 + GFF3236 0.34 +0.3
9,229 - GFF3236 0.40 -0.3
9,328 + GFF3236 0.50 +0.0
9,408 - GFF3236 0.57 +0.1
9,453 + GFF3236 0.62 -1.5
9,454 - GFF3236 0.62 +0.5
9,457 + GFF3236 0.62 +0.8
9,457 + GFF3236 0.62 +0.1
9,645 - GFF3236 0.81 +1.0
10,002 - -0.1
10,083 + GFF3237 0.15 -1.1
10,442 + GFF3237 0.81 -0.2
10,729 - GFF3238 0.17 +0.8
10,780 - GFF3238 0.21 +0.8
10,837 + GFF3238 0.27 +0.8
11,093 + GFF3238 0.50 -0.5
11,094 - GFF3238 0.50 -0.1
11,154 + GFF3238 0.55 +0.5
11,209 - GFF3238 0.60 -1.9
11,249 + GFF3238 0.64 +0.4
11,250 - GFF3238 0.64 +0.1
11,430 - GFF3238 0.80 +0.2

Or see this region's nucleotide sequence