Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3211

Experiment: LB_plus_SM_buffer with EIP30_phage 0.0000875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3210 and GFF3211 are separated by 97 nucleotidesGFF3211 and GFF3212 are separated by 540 nucleotides GFF3210 - Threonine dehydratase, catabolic (EC 4.3.1.19), at 216,521 to 217,510 GFF3210 GFF3211 - Threonine catabolic operon transcriptional activator TdcA, at 217,608 to 218,546 GFF3211 GFF3212 - FIG01046763: hypothetical protein, at 219,087 to 219,317 GFF3212 Position (kb) 217 218 219Strain fitness (log2 ratio) -1 0 1at 216.673 kb on + strand, within GFF3210at 217.313 kb on - strand, within GFF3210at 217.313 kb on - strand, within GFF3210at 217.435 kb on - strandat 217.845 kb on - strand, within GFF3211at 217.846 kb on + strand, within GFF3211at 217.930 kb on + strand, within GFF3211at 218.067 kb on + strand, within GFF3211at 218.195 kb on + strand, within GFF3211at 218.196 kb on - strand, within GFF3211at 218.276 kb on + strand, within GFF3211at 218.340 kb on + strand, within GFF3211at 218.341 kb on - strand, within GFF3211at 219.144 kb on + strand, within GFF3212

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with EIP30_phage 0.0000875 MOI
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216,673 + GFF3210 0.15 +0.5
217,313 - GFF3210 0.80 -0.6
217,313 - GFF3210 0.80 +0.9
217,435 - +0.3
217,845 - GFF3211 0.25 -0.1
217,846 + GFF3211 0.25 -0.4
217,930 + GFF3211 0.34 -0.5
218,067 + GFF3211 0.49 -0.3
218,195 + GFF3211 0.63 +0.2
218,196 - GFF3211 0.63 +0.5
218,276 + GFF3211 0.71 -0.2
218,340 + GFF3211 0.78 -0.1
218,341 - GFF3211 0.78 -1.1
219,144 + GFF3212 0.25 +0.0

Or see this region's nucleotide sequence