Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2986

Experiment: LB_plus_SM_buffer with EIP30_phage 0.0000875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2984 and GFF2985 are separated by 85 nucleotidesGFF2985 and GFF2986 are separated by 50 nucleotidesGFF2986 and GFF2987 are separated by 75 nucleotides GFF2984 - Uncharacterized lipoprotein YgeR precursor, at 2,709 to 3,461 GFF2984 GFF2985 - hypothetical protein, at 3,547 to 3,681 GFF2985 GFF2986 - Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2), at 3,732 to 4,277 GFF2986 GFF2987 - Lysyl-tRNA synthetase (class II) (EC 6.1.1.6), at 4,353 to 5,870 GFF2987 Position (kb) 3 4 5Strain fitness (log2 ratio) -1 0 1at 2.791 kb on - strand, within GFF2984at 2.791 kb on - strand, within GFF2984at 2.883 kb on - strand, within GFF2984at 2.897 kb on + strand, within GFF2984at 2.898 kb on - strand, within GFF2984at 2.902 kb on + strand, within GFF2984at 2.918 kb on + strand, within GFF2984at 3.069 kb on - strand, within GFF2984at 3.084 kb on + strand, within GFF2984at 3.242 kb on + strand, within GFF2984at 3.243 kb on - strand, within GFF2984at 3.246 kb on - strand, within GFF2984at 3.247 kb on + strand, within GFF2984at 3.248 kb on - strand, within GFF2984at 3.312 kb on - strand, within GFF2984at 3.341 kb on + strand, within GFF2984at 3.343 kb on + strand, within GFF2984at 3.426 kb on - strandat 3.497 kb on + strandat 3.567 kb on + strand, within GFF2985at 3.584 kb on + strand, within GFF2985at 3.585 kb on - strand, within GFF2985at 3.585 kb on - strand, within GFF2985at 3.588 kb on - strand, within GFF2985at 3.642 kb on - strand, within GFF2985at 3.683 kb on + strandat 3.684 kb on - strandat 3.684 kb on - strandat 3.684 kb on - strandat 3.684 kb on - strandat 3.806 kb on + strand, within GFF2986at 3.813 kb on - strand, within GFF2986at 3.815 kb on + strand, within GFF2986at 3.847 kb on + strand, within GFF2986at 4.146 kb on + strand, within GFF2986at 4.355 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with EIP30_phage 0.0000875 MOI
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2,791 - GFF2984 0.11 -0.3
2,791 - GFF2984 0.11 +0.5
2,883 - GFF2984 0.23 +0.6
2,897 + GFF2984 0.25 +0.1
2,898 - GFF2984 0.25 -1.0
2,902 + GFF2984 0.26 -0.1
2,918 + GFF2984 0.28 +0.9
3,069 - GFF2984 0.48 -0.5
3,084 + GFF2984 0.50 -0.2
3,242 + GFF2984 0.71 +0.9
3,243 - GFF2984 0.71 -0.3
3,246 - GFF2984 0.71 -0.0
3,247 + GFF2984 0.71 -0.1
3,248 - GFF2984 0.72 +0.7
3,312 - GFF2984 0.80 +0.7
3,341 + GFF2984 0.84 +0.2
3,343 + GFF2984 0.84 +0.0
3,426 - +0.9
3,497 + +0.3
3,567 + GFF2985 0.15 +0.3
3,584 + GFF2985 0.27 -0.0
3,585 - GFF2985 0.28 +0.1
3,585 - GFF2985 0.28 +0.9
3,588 - GFF2985 0.30 -0.3
3,642 - GFF2985 0.70 +1.0
3,683 + +0.1
3,684 - -0.0
3,684 - +0.0
3,684 - +0.4
3,684 - -0.4
3,806 + GFF2986 0.14 -0.0
3,813 - GFF2986 0.15 +0.5
3,815 + GFF2986 0.15 +1.1
3,847 + GFF2986 0.21 +0.6
4,146 + GFF2986 0.76 +0.3
4,355 - -0.3

Or see this region's nucleotide sequence