Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2085

Experiment: LB_plus_SM_buffer with EIP30_phage 0.0000875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2083 and GFF2084 overlap by 23 nucleotidesGFF2084 and GFF2085 are separated by 12 nucleotides GFF2083 - Ethanolamine utilization protein EutQ, at 45,375 to 46,064 GFF2083 GFF2084 - Ethanolamine utilization protein EutP, at 46,042 to 46,521 GFF2084 GFF2085 - Ethanolamine utilization polyhedral-body-like protein EutS, at 46,534 to 46,869 GFF2085 Position (kb) 46 47Strain fitness (log2 ratio) -1 0 1 2at 45.594 kb on - strand, within GFF2083at 45.977 kb on + strand, within GFF2083at 45.977 kb on + strand, within GFF2083at 45.978 kb on - strand, within GFF2083at 46.267 kb on + strand, within GFF2084at 46.632 kb on - strand, within GFF2085at 46.969 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with EIP30_phage 0.0000875 MOI
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45,594 - GFF2083 0.32 +0.4
45,977 + GFF2083 0.87 -0.2
45,977 + GFF2083 0.87 +0.8
45,978 - GFF2083 0.87 +2.6
46,267 + GFF2084 0.47 +0.8
46,632 - GFF2085 0.29 -0.5
46,969 + -0.1

Or see this region's nucleotide sequence