Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04139 and ECD_04391 are separated by 342 nucleotides ECD_04391 and ECD_04140 are separated by 27 nucleotides
ECD_04139: ECD_04139 - uncharacterized protein, at 4,411,517 to 4,411,846
_04139
ECD_04391: ECD_04391 - hypothetical protein, at 4,412,189 to 4,412,332
_04391
ECD_04140: ECD_04140 - IS4 transposase, at 4,412,360 to 4,413,688
_04140
Position (kb) 4412
4413 Strain fitness (log2 ratio) -2
-1
0
1 at 4411.199 kb on - strand at 4411.199 kb on - strand at 4411.201 kb on + strand at 4411.201 kb on + strand at 4411.202 kb on - strand at 4411.202 kb on - strand at 4411.202 kb on - strand at 4411.202 kb on - strand at 4411.202 kb on - strand at 4411.202 kb on - strand at 4411.222 kb on - strand at 4411.315 kb on - strand at 4411.315 kb on - strand at 4411.622 kb on + strand, within ECD_04139 at 4411.622 kb on + strand, within ECD_04139 at 4411.623 kb on - strand, within ECD_04139 at 4411.623 kb on - strand, within ECD_04139 at 4411.638 kb on - strand, within ECD_04139 at 4411.813 kb on - strand, within ECD_04139 at 4411.813 kb on - strand, within ECD_04139 at 4411.851 kb on + strand at 4411.927 kb on + strand at 4411.927 kb on + strand at 4411.928 kb on - strand at 4411.965 kb on - strand at 4412.026 kb on + strand at 4412.027 kb on - strand at 4412.027 kb on - strand at 4412.082 kb on - strand at 4412.083 kb on + strand at 4412.083 kb on + strand at 4412.083 kb on + strand at 4412.083 kb on + strand at 4412.083 kb on + strand at 4412.083 kb on + strand at 4412.083 kb on + strand at 4412.084 kb on - strand at 4412.084 kb on - strand at 4412.138 kb on - strand at 4412.154 kb on - strand at 4412.154 kb on - strand at 4412.161 kb on + strand at 4412.161 kb on + strand at 4412.187 kb on + strand at 4412.188 kb on - strand at 4412.188 kb on - strand at 4412.307 kb on + strand, within ECD_04391 at 4412.307 kb on + strand, within ECD_04391 at 4412.331 kb on - strand at 4412.348 kb on - strand at 4412.474 kb on - strand at 4412.503 kb on + strand, within ECD_04140 at 4412.504 kb on - strand, within ECD_04140 at 4412.641 kb on - strand, within ECD_04140 at 4412.730 kb on - strand, within ECD_04140 at 4412.769 kb on + strand, within ECD_04140 at 4412.971 kb on - strand, within ECD_04140 at 4412.993 kb on + strand, within ECD_04140 at 4412.994 kb on - strand, within ECD_04140 at 4413.036 kb on - strand, within ECD_04140 at 4413.054 kb on + strand, within ECD_04140 at 4413.054 kb on + strand, within ECD_04140 at 4413.055 kb on - strand, within ECD_04140 at 4413.098 kb on + strand, within ECD_04140 at 4413.099 kb on - strand, within ECD_04140 at 4413.101 kb on - strand, within ECD_04140 at 4413.101 kb on - strand, within ECD_04140
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10 remove 4,411,199 - +1.1 4,411,199 - -0.2 4,411,201 + -0.7 4,411,201 + -1.1 4,411,202 - -0.7 4,411,202 - +0.3 4,411,202 - -0.5 4,411,202 - -1.2 4,411,202 - +0.1 4,411,202 - -0.6 4,411,222 - -0.6 4,411,315 - -1.4 4,411,315 - -1.0 4,411,622 + ECD_04139 0.32 +0.3 4,411,622 + ECD_04139 0.32 -0.6 4,411,623 - ECD_04139 0.32 +0.0 4,411,623 - ECD_04139 0.32 +0.8 4,411,638 - ECD_04139 0.37 +0.8 4,411,813 - ECD_04139 0.90 -0.6 4,411,813 - ECD_04139 0.90 -1.1 4,411,851 + -0.0 4,411,927 + -0.1 4,411,927 + -0.2 4,411,928 - -1.6 4,411,965 - -0.5 4,412,026 + -0.2 4,412,027 - -1.0 4,412,027 - -0.5 4,412,082 - -0.2 4,412,083 + +0.1 4,412,083 + -0.3 4,412,083 + -0.5 4,412,083 + -0.2 4,412,083 + +0.4 4,412,083 + -2.2 4,412,083 + +0.2 4,412,084 - -0.2 4,412,084 - -1.3 4,412,138 - -0.6 4,412,154 - -0.5 4,412,154 - +0.1 4,412,161 + +0.1 4,412,161 + +0.4 4,412,187 + -0.1 4,412,188 - -0.2 4,412,188 - -0.9 4,412,307 + ECD_04391 0.82 +0.2 4,412,307 + ECD_04391 0.82 -0.1 4,412,331 - -1.3 4,412,348 - +0.1 4,412,474 - +1.0 4,412,503 + ECD_04140 0.11 -0.0 4,412,504 - ECD_04140 0.11 +0.1 4,412,641 - ECD_04140 0.21 +0.2 4,412,730 - ECD_04140 0.28 +0.5 4,412,769 + ECD_04140 0.31 +0.7 4,412,971 - ECD_04140 0.46 +0.5 4,412,993 + ECD_04140 0.48 -0.3 4,412,994 - ECD_04140 0.48 +0.3 4,413,036 - ECD_04140 0.51 -0.2 4,413,054 + ECD_04140 0.52 +0.4 4,413,054 + ECD_04140 0.52 -0.3 4,413,055 - ECD_04140 0.52 +0.9 4,413,098 + ECD_04140 0.56 -0.1 4,413,099 - ECD_04140 0.56 +0.4 4,413,101 - ECD_04140 0.56 +0.3 4,413,101 - ECD_04140 0.56 -1.2
Or see this region's nucleotide sequence