Strain Fitness in Escherichia coli BL21 around ECD_03977

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03976 and ECD_03977 are separated by 24 nucleotidesECD_03977 and ECD_03978 are separated by 132 nucleotides ECD_03976: ECD_03976 - phosphonate ABC transporter periplasmic binding protein, at 4,230,515 to 4,231,531 _03976 ECD_03977: ECD_03977 - phosphonate ABC transporter ATPase, at 4,231,556 to 4,232,344 _03977 ECD_03978: ECD_03978 - metalloprotein superfamily protein, at 4,232,477 to 4,232,920 _03978 Position (kb) 4231 4232 4233Strain fitness (log2 ratio) -2 -1 0 1at 4230.772 kb on - strand, within ECD_03976at 4231.024 kb on + strand, within ECD_03976at 4231.024 kb on + strand, within ECD_03976at 4231.044 kb on + strand, within ECD_03976at 4231.044 kb on + strand, within ECD_03976at 4231.045 kb on - strand, within ECD_03976at 4231.045 kb on - strand, within ECD_03976at 4231.148 kb on - strand, within ECD_03976at 4231.315 kb on - strand, within ECD_03976at 4231.371 kb on - strand, within ECD_03976at 4231.517 kb on + strandat 4231.517 kb on + strandat 4231.517 kb on + strandat 4231.648 kb on - strand, within ECD_03977at 4231.702 kb on - strand, within ECD_03977at 4232.036 kb on + strand, within ECD_03977at 4232.037 kb on - strand, within ECD_03977at 4232.173 kb on + strand, within ECD_03977at 4232.204 kb on + strand, within ECD_03977at 4232.407 kb on - strandat 4232.670 kb on + strand, within ECD_03978at 4232.830 kb on + strand, within ECD_03978at 4232.854 kb on + strand, within ECD_03978at 4232.855 kb on - strand, within ECD_03978at 4232.855 kb on - strand, within ECD_03978at 4232.855 kb on - strand, within ECD_03978at 4232.862 kb on + strand, within ECD_03978at 4232.904 kb on + strandat 4232.905 kb on - strandat 4232.937 kb on - strandat 4232.957 kb on - strandat 4233.044 kb on - strandat 4233.244 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
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4,230,772 - ECD_03976 0.25 +0.2
4,231,024 + ECD_03976 0.50 +1.5
4,231,024 + ECD_03976 0.50 -1.1
4,231,044 + ECD_03976 0.52 -0.7
4,231,044 + ECD_03976 0.52 +0.0
4,231,045 - ECD_03976 0.52 -2.2
4,231,045 - ECD_03976 0.52 -1.2
4,231,148 - ECD_03976 0.62 -0.3
4,231,315 - ECD_03976 0.79 -1.1
4,231,371 - ECD_03976 0.84 -0.8
4,231,517 + -0.2
4,231,517 + -0.7
4,231,517 + -0.5
4,231,648 - ECD_03977 0.12 -0.5
4,231,702 - ECD_03977 0.19 +0.0
4,232,036 + ECD_03977 0.61 -0.9
4,232,037 - ECD_03977 0.61 -0.9
4,232,173 + ECD_03977 0.78 -0.1
4,232,204 + ECD_03977 0.82 -0.8
4,232,407 - +0.1
4,232,670 + ECD_03978 0.43 +0.2
4,232,830 + ECD_03978 0.80 +0.2
4,232,854 + ECD_03978 0.85 -0.0
4,232,855 - ECD_03978 0.85 -0.6
4,232,855 - ECD_03978 0.85 -0.5
4,232,855 - ECD_03978 0.85 -0.4
4,232,862 + ECD_03978 0.87 +0.4
4,232,904 + +0.0
4,232,905 - -0.4
4,232,937 - -0.1
4,232,957 - -0.8
4,233,044 - +0.1
4,233,244 - +0.4

Or see this region's nucleotide sequence