Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03921 and ECD_03922 are separated by 133 nucleotides ECD_03922 and ECD_03923 are separated by 165 nucleotides ECD_03923 and ECD_03924 are separated by 82 nucleotides
ECD_03921: ECD_03921 - tRNA-dihydrouridine synthase A, at 4,169,078 to 4,170,115
_03921
ECD_03922: ECD_03922 - phage shock protein G, at 4,170,249 to 4,170,491
_03922
ECD_03923: ECD_03923 - quinone oxidoreductase, NADPH-dependent, at 4,170,657 to 4,171,640
_03923
ECD_03924: ECD_03924 - replicative DNA helicase, at 4,171,723 to 4,173,138
_03924
Position (kb)
4170
4171
4172 Strain fitness (log2 ratio)
-2
-1
0
1 at 4169.711 kb on + strand, within ECD_03921 at 4169.711 kb on + strand, within ECD_03921 at 4169.800 kb on + strand, within ECD_03921 at 4169.832 kb on - strand, within ECD_03921 at 4169.925 kb on - strand, within ECD_03921 at 4169.930 kb on + strand, within ECD_03921 at 4169.930 kb on + strand, within ECD_03921 at 4169.931 kb on - strand, within ECD_03921 at 4169.931 kb on - strand, within ECD_03921 at 4169.960 kb on + strand, within ECD_03921 at 4169.960 kb on + strand, within ECD_03921 at 4169.971 kb on + strand, within ECD_03921 at 4169.972 kb on - strand, within ECD_03921 at 4169.972 kb on - strand, within ECD_03921 at 4169.972 kb on - strand, within ECD_03921 at 4169.984 kb on - strand, within ECD_03921 at 4169.984 kb on - strand, within ECD_03921 at 4169.984 kb on - strand, within ECD_03921 at 4170.005 kb on - strand, within ECD_03921 at 4170.033 kb on - strand at 4170.070 kb on + strand at 4170.071 kb on - strand at 4170.259 kb on + strand at 4170.350 kb on + strand, within ECD_03922 at 4170.350 kb on + strand, within ECD_03922 at 4170.351 kb on - strand, within ECD_03922 at 4170.351 kb on - strand, within ECD_03922 at 4170.351 kb on - strand, within ECD_03922 at 4170.384 kb on - strand, within ECD_03922 at 4170.404 kb on - strand, within ECD_03922 at 4170.429 kb on - strand, within ECD_03922 at 4170.429 kb on - strand, within ECD_03922 at 4170.517 kb on - strand at 4170.530 kb on + strand at 4170.531 kb on - strand at 4170.541 kb on - strand at 4170.601 kb on + strand at 4170.602 kb on - strand at 4170.606 kb on - strand at 4170.606 kb on - strand at 4170.616 kb on + strand at 4170.764 kb on + strand, within ECD_03923 at 4170.764 kb on + strand, within ECD_03923 at 4170.835 kb on + strand, within ECD_03923 at 4170.836 kb on - strand, within ECD_03923 at 4170.836 kb on - strand, within ECD_03923 at 4170.836 kb on - strand, within ECD_03923 at 4170.837 kb on - strand, within ECD_03923 at 4170.862 kb on + strand, within ECD_03923 at 4170.862 kb on + strand, within ECD_03923 at 4170.862 kb on + strand, within ECD_03923 at 4170.863 kb on - strand, within ECD_03923 at 4170.939 kb on + strand, within ECD_03923 at 4171.070 kb on + strand, within ECD_03923 at 4171.070 kb on + strand, within ECD_03923 at 4171.071 kb on - strand, within ECD_03923 at 4171.125 kb on + strand, within ECD_03923 at 4171.125 kb on + strand, within ECD_03923 at 4171.137 kb on - strand, within ECD_03923 at 4171.252 kb on + strand, within ECD_03923 at 4171.252 kb on + strand, within ECD_03923 at 4171.252 kb on + strand, within ECD_03923 at 4171.253 kb on - strand, within ECD_03923 at 4171.337 kb on + strand, within ECD_03923 at 4171.337 kb on + strand, within ECD_03923 at 4171.357 kb on + strand, within ECD_03923 at 4171.358 kb on - strand, within ECD_03923 at 4171.386 kb on + strand, within ECD_03923 at 4171.404 kb on - strand, within ECD_03923 at 4171.404 kb on - strand, within ECD_03923 at 4171.404 kb on - strand, within ECD_03923 at 4171.406 kb on + strand, within ECD_03923 at 4171.406 kb on + strand, within ECD_03923 at 4171.407 kb on - strand, within ECD_03923 at 4171.413 kb on + strand, within ECD_03923 at 4171.414 kb on - strand, within ECD_03923 at 4171.458 kb on + strand, within ECD_03923 at 4171.504 kb on + strand, within ECD_03923 at 4171.504 kb on + strand, within ECD_03923 at 4171.504 kb on + strand, within ECD_03923 at 4171.504 kb on + strand, within ECD_03923 at 4171.504 kb on + strand, within ECD_03923 at 4171.504 kb on + strand, within ECD_03923 at 4171.505 kb on - strand, within ECD_03923 at 4171.505 kb on - strand, within ECD_03923 at 4171.505 kb on - strand, within ECD_03923 at 4171.505 kb on - strand, within ECD_03923 at 4171.505 kb on - strand, within ECD_03923 at 4171.505 kb on - strand, within ECD_03923 at 4171.505 kb on - strand, within ECD_03923 at 4171.505 kb on - strand, within ECD_03923 at 4171.505 kb on - strand, within ECD_03923 at 4171.505 kb on - strand, within ECD_03923 at 4171.505 kb on - strand, within ECD_03923 at 4171.505 kb on - strand, within ECD_03923 at 4171.505 kb on - strand, within ECD_03923 at 4171.505 kb on - strand, within ECD_03923 at 4171.585 kb on - strand at 4171.656 kb on + strand at 4171.657 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10 remove 4,169,711 + ECD_03921 0.61 +0.8 4,169,711 + ECD_03921 0.61 -0.3 4,169,800 + ECD_03921 0.70 -0.5 4,169,832 - ECD_03921 0.73 -1.1 4,169,925 - ECD_03921 0.82 +0.2 4,169,930 + ECD_03921 0.82 +0.8 4,169,930 + ECD_03921 0.82 -1.2 4,169,931 - ECD_03921 0.82 -0.2 4,169,931 - ECD_03921 0.82 +0.1 4,169,960 + ECD_03921 0.85 +1.2 4,169,960 + ECD_03921 0.85 -0.1 4,169,971 + ECD_03921 0.86 -0.1 4,169,972 - ECD_03921 0.86 +0.3 4,169,972 - ECD_03921 0.86 +0.3 4,169,972 - ECD_03921 0.86 +0.2 4,169,984 - ECD_03921 0.87 -0.1 4,169,984 - ECD_03921 0.87 +0.2 4,169,984 - ECD_03921 0.87 -0.3 4,170,005 - ECD_03921 0.89 -0.5 4,170,033 - -0.2 4,170,070 + -0.3 4,170,071 - +0.1 4,170,259 + -0.4 4,170,350 + ECD_03922 0.42 +0.5 4,170,350 + ECD_03922 0.42 -0.3 4,170,351 - ECD_03922 0.42 -0.4 4,170,351 - ECD_03922 0.42 -1.0 4,170,351 - ECD_03922 0.42 +0.6 4,170,384 - ECD_03922 0.56 -0.2 4,170,404 - ECD_03922 0.64 -0.1 4,170,429 - ECD_03922 0.74 +0.1 4,170,429 - ECD_03922 0.74 +0.4 4,170,517 - +0.2 4,170,530 + +0.1 4,170,531 - -0.7 4,170,541 - +0.2 4,170,601 + +1.3 4,170,602 - -0.5 4,170,606 - -0.7 4,170,606 - -1.4 4,170,616 + +0.4 4,170,764 + ECD_03923 0.11 -0.5 4,170,764 + ECD_03923 0.11 -0.2 4,170,835 + ECD_03923 0.18 +0.5 4,170,836 - ECD_03923 0.18 -0.4 4,170,836 - ECD_03923 0.18 +0.0 4,170,836 - ECD_03923 0.18 +0.9 4,170,837 - ECD_03923 0.18 -0.1 4,170,862 + ECD_03923 0.21 +0.0 4,170,862 + ECD_03923 0.21 -0.9 4,170,862 + ECD_03923 0.21 -0.8 4,170,863 - ECD_03923 0.21 -0.3 4,170,939 + ECD_03923 0.29 -1.0 4,171,070 + ECD_03923 0.42 -0.3 4,171,070 + ECD_03923 0.42 -0.3 4,171,071 - ECD_03923 0.42 -0.1 4,171,125 + ECD_03923 0.48 -0.9 4,171,125 + ECD_03923 0.48 +0.9 4,171,137 - ECD_03923 0.49 -0.5 4,171,252 + ECD_03923 0.60 -0.8 4,171,252 + ECD_03923 0.60 -0.5 4,171,252 + ECD_03923 0.60 -0.6 4,171,253 - ECD_03923 0.61 +0.6 4,171,337 + ECD_03923 0.69 +0.0 4,171,337 + ECD_03923 0.69 -0.0 4,171,357 + ECD_03923 0.71 +0.5 4,171,358 - ECD_03923 0.71 +0.0 4,171,386 + ECD_03923 0.74 +0.7 4,171,404 - ECD_03923 0.76 +0.1 4,171,404 - ECD_03923 0.76 -2.0 4,171,404 - ECD_03923 0.76 +0.3 4,171,406 + ECD_03923 0.76 -0.7 4,171,406 + ECD_03923 0.76 -0.5 4,171,407 - ECD_03923 0.76 +0.2 4,171,413 + ECD_03923 0.77 -1.1 4,171,414 - ECD_03923 0.77 +0.1 4,171,458 + ECD_03923 0.81 +1.1 4,171,504 + ECD_03923 0.86 -1.0 4,171,504 + ECD_03923 0.86 +0.0 4,171,504 + ECD_03923 0.86 -0.6 4,171,504 + ECD_03923 0.86 -0.2 4,171,504 + ECD_03923 0.86 -0.4 4,171,504 + ECD_03923 0.86 -0.1 4,171,505 - ECD_03923 0.86 +0.3 4,171,505 - ECD_03923 0.86 +0.1 4,171,505 - ECD_03923 0.86 -0.0 4,171,505 - ECD_03923 0.86 +0.3 4,171,505 - ECD_03923 0.86 +0.5 4,171,505 - ECD_03923 0.86 -0.3 4,171,505 - ECD_03923 0.86 -0.1 4,171,505 - ECD_03923 0.86 +0.1 4,171,505 - ECD_03923 0.86 -0.0 4,171,505 - ECD_03923 0.86 -0.4 4,171,505 - ECD_03923 0.86 +1.1 4,171,505 - ECD_03923 0.86 +0.1 4,171,505 - ECD_03923 0.86 -0.4 4,171,505 - ECD_03923 0.86 +0.3 4,171,585 - -0.5 4,171,656 + -0.3 4,171,657 - -0.2
Or see this region's nucleotide sequence