Strain Fitness in Escherichia coli BL21 around ECD_03923

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03921 and ECD_03922 are separated by 133 nucleotidesECD_03922 and ECD_03923 are separated by 165 nucleotidesECD_03923 and ECD_03924 are separated by 82 nucleotides ECD_03921: ECD_03921 - tRNA-dihydrouridine synthase A, at 4,169,078 to 4,170,115 _03921 ECD_03922: ECD_03922 - phage shock protein G, at 4,170,249 to 4,170,491 _03922 ECD_03923: ECD_03923 - quinone oxidoreductase, NADPH-dependent, at 4,170,657 to 4,171,640 _03923 ECD_03924: ECD_03924 - replicative DNA helicase, at 4,171,723 to 4,173,138 _03924 Position (kb) 4170 4171 4172Strain fitness (log2 ratio) -2 -1 0 1at 4169.711 kb on + strand, within ECD_03921at 4169.711 kb on + strand, within ECD_03921at 4169.800 kb on + strand, within ECD_03921at 4169.832 kb on - strand, within ECD_03921at 4169.925 kb on - strand, within ECD_03921at 4169.930 kb on + strand, within ECD_03921at 4169.930 kb on + strand, within ECD_03921at 4169.931 kb on - strand, within ECD_03921at 4169.931 kb on - strand, within ECD_03921at 4169.960 kb on + strand, within ECD_03921at 4169.960 kb on + strand, within ECD_03921at 4169.971 kb on + strand, within ECD_03921at 4169.972 kb on - strand, within ECD_03921at 4169.972 kb on - strand, within ECD_03921at 4169.972 kb on - strand, within ECD_03921at 4169.984 kb on - strand, within ECD_03921at 4169.984 kb on - strand, within ECD_03921at 4169.984 kb on - strand, within ECD_03921at 4170.005 kb on - strand, within ECD_03921at 4170.033 kb on - strandat 4170.070 kb on + strandat 4170.071 kb on - strandat 4170.259 kb on + strandat 4170.350 kb on + strand, within ECD_03922at 4170.350 kb on + strand, within ECD_03922at 4170.351 kb on - strand, within ECD_03922at 4170.351 kb on - strand, within ECD_03922at 4170.351 kb on - strand, within ECD_03922at 4170.384 kb on - strand, within ECD_03922at 4170.404 kb on - strand, within ECD_03922at 4170.429 kb on - strand, within ECD_03922at 4170.429 kb on - strand, within ECD_03922at 4170.517 kb on - strandat 4170.530 kb on + strandat 4170.531 kb on - strandat 4170.541 kb on - strandat 4170.601 kb on + strandat 4170.602 kb on - strandat 4170.606 kb on - strandat 4170.606 kb on - strandat 4170.616 kb on + strandat 4170.764 kb on + strand, within ECD_03923at 4170.764 kb on + strand, within ECD_03923at 4170.835 kb on + strand, within ECD_03923at 4170.836 kb on - strand, within ECD_03923at 4170.836 kb on - strand, within ECD_03923at 4170.836 kb on - strand, within ECD_03923at 4170.837 kb on - strand, within ECD_03923at 4170.862 kb on + strand, within ECD_03923at 4170.862 kb on + strand, within ECD_03923at 4170.862 kb on + strand, within ECD_03923at 4170.863 kb on - strand, within ECD_03923at 4170.939 kb on + strand, within ECD_03923at 4171.070 kb on + strand, within ECD_03923at 4171.070 kb on + strand, within ECD_03923at 4171.071 kb on - strand, within ECD_03923at 4171.125 kb on + strand, within ECD_03923at 4171.125 kb on + strand, within ECD_03923at 4171.137 kb on - strand, within ECD_03923at 4171.252 kb on + strand, within ECD_03923at 4171.252 kb on + strand, within ECD_03923at 4171.252 kb on + strand, within ECD_03923at 4171.253 kb on - strand, within ECD_03923at 4171.337 kb on + strand, within ECD_03923at 4171.337 kb on + strand, within ECD_03923at 4171.357 kb on + strand, within ECD_03923at 4171.358 kb on - strand, within ECD_03923at 4171.386 kb on + strand, within ECD_03923at 4171.404 kb on - strand, within ECD_03923at 4171.404 kb on - strand, within ECD_03923at 4171.404 kb on - strand, within ECD_03923at 4171.406 kb on + strand, within ECD_03923at 4171.406 kb on + strand, within ECD_03923at 4171.407 kb on - strand, within ECD_03923at 4171.413 kb on + strand, within ECD_03923at 4171.414 kb on - strand, within ECD_03923at 4171.458 kb on + strand, within ECD_03923at 4171.504 kb on + strand, within ECD_03923at 4171.504 kb on + strand, within ECD_03923at 4171.504 kb on + strand, within ECD_03923at 4171.504 kb on + strand, within ECD_03923at 4171.504 kb on + strand, within ECD_03923at 4171.504 kb on + strand, within ECD_03923at 4171.505 kb on - strand, within ECD_03923at 4171.505 kb on - strand, within ECD_03923at 4171.505 kb on - strand, within ECD_03923at 4171.505 kb on - strand, within ECD_03923at 4171.505 kb on - strand, within ECD_03923at 4171.505 kb on - strand, within ECD_03923at 4171.505 kb on - strand, within ECD_03923at 4171.505 kb on - strand, within ECD_03923at 4171.505 kb on - strand, within ECD_03923at 4171.505 kb on - strand, within ECD_03923at 4171.505 kb on - strand, within ECD_03923at 4171.505 kb on - strand, within ECD_03923at 4171.505 kb on - strand, within ECD_03923at 4171.505 kb on - strand, within ECD_03923at 4171.585 kb on - strandat 4171.656 kb on + strandat 4171.657 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
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4,169,711 + ECD_03921 0.61 +0.8
4,169,711 + ECD_03921 0.61 -0.3
4,169,800 + ECD_03921 0.70 -0.5
4,169,832 - ECD_03921 0.73 -1.1
4,169,925 - ECD_03921 0.82 +0.2
4,169,930 + ECD_03921 0.82 +0.8
4,169,930 + ECD_03921 0.82 -1.2
4,169,931 - ECD_03921 0.82 -0.2
4,169,931 - ECD_03921 0.82 +0.1
4,169,960 + ECD_03921 0.85 +1.2
4,169,960 + ECD_03921 0.85 -0.1
4,169,971 + ECD_03921 0.86 -0.1
4,169,972 - ECD_03921 0.86 +0.3
4,169,972 - ECD_03921 0.86 +0.3
4,169,972 - ECD_03921 0.86 +0.2
4,169,984 - ECD_03921 0.87 -0.1
4,169,984 - ECD_03921 0.87 +0.2
4,169,984 - ECD_03921 0.87 -0.3
4,170,005 - ECD_03921 0.89 -0.5
4,170,033 - -0.2
4,170,070 + -0.3
4,170,071 - +0.1
4,170,259 + -0.4
4,170,350 + ECD_03922 0.42 +0.5
4,170,350 + ECD_03922 0.42 -0.3
4,170,351 - ECD_03922 0.42 -0.4
4,170,351 - ECD_03922 0.42 -1.0
4,170,351 - ECD_03922 0.42 +0.6
4,170,384 - ECD_03922 0.56 -0.2
4,170,404 - ECD_03922 0.64 -0.1
4,170,429 - ECD_03922 0.74 +0.1
4,170,429 - ECD_03922 0.74 +0.4
4,170,517 - +0.2
4,170,530 + +0.1
4,170,531 - -0.7
4,170,541 - +0.2
4,170,601 + +1.3
4,170,602 - -0.5
4,170,606 - -0.7
4,170,606 - -1.4
4,170,616 + +0.4
4,170,764 + ECD_03923 0.11 -0.5
4,170,764 + ECD_03923 0.11 -0.2
4,170,835 + ECD_03923 0.18 +0.5
4,170,836 - ECD_03923 0.18 -0.4
4,170,836 - ECD_03923 0.18 +0.0
4,170,836 - ECD_03923 0.18 +0.9
4,170,837 - ECD_03923 0.18 -0.1
4,170,862 + ECD_03923 0.21 +0.0
4,170,862 + ECD_03923 0.21 -0.9
4,170,862 + ECD_03923 0.21 -0.8
4,170,863 - ECD_03923 0.21 -0.3
4,170,939 + ECD_03923 0.29 -1.0
4,171,070 + ECD_03923 0.42 -0.3
4,171,070 + ECD_03923 0.42 -0.3
4,171,071 - ECD_03923 0.42 -0.1
4,171,125 + ECD_03923 0.48 -0.9
4,171,125 + ECD_03923 0.48 +0.9
4,171,137 - ECD_03923 0.49 -0.5
4,171,252 + ECD_03923 0.60 -0.8
4,171,252 + ECD_03923 0.60 -0.5
4,171,252 + ECD_03923 0.60 -0.6
4,171,253 - ECD_03923 0.61 +0.6
4,171,337 + ECD_03923 0.69 +0.0
4,171,337 + ECD_03923 0.69 -0.0
4,171,357 + ECD_03923 0.71 +0.5
4,171,358 - ECD_03923 0.71 +0.0
4,171,386 + ECD_03923 0.74 +0.7
4,171,404 - ECD_03923 0.76 +0.1
4,171,404 - ECD_03923 0.76 -2.0
4,171,404 - ECD_03923 0.76 +0.3
4,171,406 + ECD_03923 0.76 -0.7
4,171,406 + ECD_03923 0.76 -0.5
4,171,407 - ECD_03923 0.76 +0.2
4,171,413 + ECD_03923 0.77 -1.1
4,171,414 - ECD_03923 0.77 +0.1
4,171,458 + ECD_03923 0.81 +1.1
4,171,504 + ECD_03923 0.86 -1.0
4,171,504 + ECD_03923 0.86 +0.0
4,171,504 + ECD_03923 0.86 -0.6
4,171,504 + ECD_03923 0.86 -0.2
4,171,504 + ECD_03923 0.86 -0.4
4,171,504 + ECD_03923 0.86 -0.1
4,171,505 - ECD_03923 0.86 +0.3
4,171,505 - ECD_03923 0.86 +0.1
4,171,505 - ECD_03923 0.86 -0.0
4,171,505 - ECD_03923 0.86 +0.3
4,171,505 - ECD_03923 0.86 +0.5
4,171,505 - ECD_03923 0.86 -0.3
4,171,505 - ECD_03923 0.86 -0.1
4,171,505 - ECD_03923 0.86 +0.1
4,171,505 - ECD_03923 0.86 -0.0
4,171,505 - ECD_03923 0.86 -0.4
4,171,505 - ECD_03923 0.86 +1.1
4,171,505 - ECD_03923 0.86 +0.1
4,171,505 - ECD_03923 0.86 -0.4
4,171,505 - ECD_03923 0.86 +0.3
4,171,585 - -0.5
4,171,656 + -0.3
4,171,657 - -0.2

Or see this region's nucleotide sequence