Strain Fitness in Escherichia coli BL21 around ECD_03672

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03671 and ECD_03672 overlap by 4 nucleotidesECD_03672 and ECD_03673 are separated by 2 nucleotidesECD_03673 and ECD_03674 are separated by 190 nucleotides ECD_03671: ECD_03671 - TDP-Fuc4NAc:lipidIIFuc4NAc transferase, at 3,867,765 to 3,868,844 _03671 ECD_03672: ECD_03672 - putative ECA polysaccharide chain elongation protein, at 3,868,841 to 3,870,193 _03672 ECD_03673: ECD_03673 - UDP-N-acetyl-D-mannosaminuronic acid transferase, at 3,870,196 to 3,870,936 _03673 ECD_03674: ECD_03674 - putative APC family amino acid transporter, at 3,871,127 to 3,872,512 _03674 Position (kb) 3868 3869 3870 3871Strain fitness (log2 ratio) -3 -2 -1 0 1at 3868.130 kb on + strand, within ECD_03671at 3868.358 kb on + strand, within ECD_03671at 3868.446 kb on + strand, within ECD_03671at 3868.543 kb on + strand, within ECD_03671at 3868.791 kb on + strandat 3870.120 kb on - strandat 3870.120 kb on - strandat 3870.151 kb on + strandat 3870.151 kb on + strandat 3870.151 kb on + strandat 3870.201 kb on + strandat 3870.223 kb on + strandat 3870.224 kb on - strandat 3870.224 kb on - strandat 3870.226 kb on - strandat 3870.239 kb on + strandat 3870.281 kb on - strand, within ECD_03673at 3870.281 kb on - strand, within ECD_03673at 3870.281 kb on - strand, within ECD_03673at 3870.303 kb on + strand, within ECD_03673at 3870.377 kb on + strand, within ECD_03673at 3870.382 kb on - strand, within ECD_03673at 3870.397 kb on - strand, within ECD_03673at 3870.400 kb on + strand, within ECD_03673at 3870.401 kb on - strand, within ECD_03673at 3870.423 kb on - strand, within ECD_03673at 3870.435 kb on + strand, within ECD_03673at 3870.573 kb on + strand, within ECD_03673at 3870.600 kb on + strand, within ECD_03673at 3870.622 kb on + strand, within ECD_03673at 3870.628 kb on - strand, within ECD_03673at 3870.628 kb on - strand, within ECD_03673at 3870.628 kb on - strand, within ECD_03673at 3870.760 kb on + strand, within ECD_03673at 3870.760 kb on + strand, within ECD_03673at 3870.760 kb on + strand, within ECD_03673at 3870.761 kb on - strand, within ECD_03673at 3870.761 kb on - strand, within ECD_03673at 3870.761 kb on - strand, within ECD_03673at 3870.761 kb on - strand, within ECD_03673at 3870.781 kb on + strand, within ECD_03673at 3870.782 kb on - strand, within ECD_03673at 3870.782 kb on - strand, within ECD_03673at 3870.850 kb on + strand, within ECD_03673at 3870.995 kb on + strandat 3871.016 kb on + strandat 3871.024 kb on + strandat 3871.024 kb on + strandat 3871.072 kb on - strandat 3871.072 kb on - strandat 3871.072 kb on - strandat 3871.136 kb on - strandat 3871.150 kb on - strandat 3871.174 kb on + strandat 3871.174 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
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3,868,130 + ECD_03671 0.34 -1.9
3,868,358 + ECD_03671 0.55 -1.4
3,868,446 + ECD_03671 0.63 -1.7
3,868,543 + ECD_03671 0.72 -0.3
3,868,791 + -1.0
3,870,120 - -0.6
3,870,120 - -1.0
3,870,151 + -0.1
3,870,151 + -0.3
3,870,151 + +0.6
3,870,201 + -0.5
3,870,223 + -1.0
3,870,224 - -1.5
3,870,224 - -1.7
3,870,226 - -0.9
3,870,239 + -1.0
3,870,281 - ECD_03673 0.11 -0.7
3,870,281 - ECD_03673 0.11 -1.1
3,870,281 - ECD_03673 0.11 -1.0
3,870,303 + ECD_03673 0.14 -0.6
3,870,377 + ECD_03673 0.24 -1.6
3,870,382 - ECD_03673 0.25 -1.9
3,870,397 - ECD_03673 0.27 -1.6
3,870,400 + ECD_03673 0.28 -0.8
3,870,401 - ECD_03673 0.28 -0.6
3,870,423 - ECD_03673 0.31 -0.9
3,870,435 + ECD_03673 0.32 -0.1
3,870,573 + ECD_03673 0.51 -0.7
3,870,600 + ECD_03673 0.55 -0.5
3,870,622 + ECD_03673 0.57 -0.1
3,870,628 - ECD_03673 0.58 -2.2
3,870,628 - ECD_03673 0.58 -2.2
3,870,628 - ECD_03673 0.58 -1.0
3,870,760 + ECD_03673 0.76 -0.9
3,870,760 + ECD_03673 0.76 -1.1
3,870,760 + ECD_03673 0.76 -1.0
3,870,761 - ECD_03673 0.76 -1.1
3,870,761 - ECD_03673 0.76 -1.2
3,870,761 - ECD_03673 0.76 -0.9
3,870,761 - ECD_03673 0.76 -0.8
3,870,781 + ECD_03673 0.79 -0.9
3,870,782 - ECD_03673 0.79 -1.5
3,870,782 - ECD_03673 0.79 -3.4
3,870,850 + ECD_03673 0.88 -0.6
3,870,995 + +0.0
3,871,016 + -0.2
3,871,024 + -0.5
3,871,024 + -0.3
3,871,072 - -0.2
3,871,072 - -0.4
3,871,072 - -0.3
3,871,136 - -0.6
3,871,150 - -0.3
3,871,174 + -0.8
3,871,174 + -0.6

Or see this region's nucleotide sequence