Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03671 and ECD_03672 overlap by 4 nucleotides ECD_03672 and ECD_03673 are separated by 2 nucleotides ECD_03673 and ECD_03674 are separated by 190 nucleotides
ECD_03671: ECD_03671 - TDP-Fuc4NAc:lipidIIFuc4NAc transferase, at 3,867,765 to 3,868,844
_03671
ECD_03672: ECD_03672 - putative ECA polysaccharide chain elongation protein, at 3,868,841 to 3,870,193
_03672
ECD_03673: ECD_03673 - UDP-N-acetyl-D-mannosaminuronic acid transferase, at 3,870,196 to 3,870,936
_03673
ECD_03674: ECD_03674 - putative APC family amino acid transporter, at 3,871,127 to 3,872,512
_03674
Position (kb)
3868
3869
3870
3871 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3868.130 kb on + strand, within ECD_03671 at 3868.358 kb on + strand, within ECD_03671 at 3868.446 kb on + strand, within ECD_03671 at 3868.543 kb on + strand, within ECD_03671 at 3868.791 kb on + strand at 3870.120 kb on - strand at 3870.120 kb on - strand at 3870.151 kb on + strand at 3870.151 kb on + strand at 3870.151 kb on + strand at 3870.201 kb on + strand at 3870.223 kb on + strand at 3870.224 kb on - strand at 3870.224 kb on - strand at 3870.226 kb on - strand at 3870.239 kb on + strand at 3870.281 kb on - strand, within ECD_03673 at 3870.281 kb on - strand, within ECD_03673 at 3870.281 kb on - strand, within ECD_03673 at 3870.303 kb on + strand, within ECD_03673 at 3870.377 kb on + strand, within ECD_03673 at 3870.382 kb on - strand, within ECD_03673 at 3870.397 kb on - strand, within ECD_03673 at 3870.400 kb on + strand, within ECD_03673 at 3870.401 kb on - strand, within ECD_03673 at 3870.423 kb on - strand, within ECD_03673 at 3870.435 kb on + strand, within ECD_03673 at 3870.573 kb on + strand, within ECD_03673 at 3870.600 kb on + strand, within ECD_03673 at 3870.622 kb on + strand, within ECD_03673 at 3870.628 kb on - strand, within ECD_03673 at 3870.628 kb on - strand, within ECD_03673 at 3870.628 kb on - strand, within ECD_03673 at 3870.760 kb on + strand, within ECD_03673 at 3870.760 kb on + strand, within ECD_03673 at 3870.760 kb on + strand, within ECD_03673 at 3870.761 kb on - strand, within ECD_03673 at 3870.761 kb on - strand, within ECD_03673 at 3870.761 kb on - strand, within ECD_03673 at 3870.761 kb on - strand, within ECD_03673 at 3870.781 kb on + strand, within ECD_03673 at 3870.782 kb on - strand, within ECD_03673 at 3870.782 kb on - strand, within ECD_03673 at 3870.850 kb on + strand, within ECD_03673 at 3870.995 kb on + strand at 3871.016 kb on + strand at 3871.024 kb on + strand at 3871.024 kb on + strand at 3871.072 kb on - strand at 3871.072 kb on - strand at 3871.072 kb on - strand at 3871.136 kb on - strand at 3871.150 kb on - strand at 3871.174 kb on + strand at 3871.174 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10 remove 3,868,130 + ECD_03671 0.34 -1.9 3,868,358 + ECD_03671 0.55 -1.4 3,868,446 + ECD_03671 0.63 -1.7 3,868,543 + ECD_03671 0.72 -0.3 3,868,791 + -1.0 3,870,120 - -0.6 3,870,120 - -1.0 3,870,151 + -0.1 3,870,151 + -0.3 3,870,151 + +0.6 3,870,201 + -0.5 3,870,223 + -1.0 3,870,224 - -1.5 3,870,224 - -1.7 3,870,226 - -0.9 3,870,239 + -1.0 3,870,281 - ECD_03673 0.11 -0.7 3,870,281 - ECD_03673 0.11 -1.1 3,870,281 - ECD_03673 0.11 -1.0 3,870,303 + ECD_03673 0.14 -0.6 3,870,377 + ECD_03673 0.24 -1.6 3,870,382 - ECD_03673 0.25 -1.9 3,870,397 - ECD_03673 0.27 -1.6 3,870,400 + ECD_03673 0.28 -0.8 3,870,401 - ECD_03673 0.28 -0.6 3,870,423 - ECD_03673 0.31 -0.9 3,870,435 + ECD_03673 0.32 -0.1 3,870,573 + ECD_03673 0.51 -0.7 3,870,600 + ECD_03673 0.55 -0.5 3,870,622 + ECD_03673 0.57 -0.1 3,870,628 - ECD_03673 0.58 -2.2 3,870,628 - ECD_03673 0.58 -2.2 3,870,628 - ECD_03673 0.58 -1.0 3,870,760 + ECD_03673 0.76 -0.9 3,870,760 + ECD_03673 0.76 -1.1 3,870,760 + ECD_03673 0.76 -1.0 3,870,761 - ECD_03673 0.76 -1.1 3,870,761 - ECD_03673 0.76 -1.2 3,870,761 - ECD_03673 0.76 -0.9 3,870,761 - ECD_03673 0.76 -0.8 3,870,781 + ECD_03673 0.79 -0.9 3,870,782 - ECD_03673 0.79 -1.5 3,870,782 - ECD_03673 0.79 -3.4 3,870,850 + ECD_03673 0.88 -0.6 3,870,995 + +0.0 3,871,016 + -0.2 3,871,024 + -0.5 3,871,024 + -0.3 3,871,072 - -0.2 3,871,072 - -0.4 3,871,072 - -0.3 3,871,136 - -0.6 3,871,150 - -0.3 3,871,174 + -0.8 3,871,174 + -0.6
Or see this region's nucleotide sequence