Strain Fitness in Escherichia coli BL21 around ECD_03670

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03669 and ECD_03670 are separated by 1 nucleotidesECD_03670 and ECD_03671 overlap by 4 nucleotides ECD_03669: ECD_03669 - TDP-4-oxo-6-deoxy-D-glucose transaminase, at 3,865,386 to 3,866,516 _03669 ECD_03670: ECD_03670 - O-antigen translocase, at 3,866,518 to 3,867,768 _03670 ECD_03671: ECD_03671 - TDP-Fuc4NAc:lipidIIFuc4NAc transferase, at 3,867,765 to 3,868,844 _03671 Position (kb) 3866 3867 3868Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3865.535 kb on - strand, within ECD_03669at 3865.621 kb on - strand, within ECD_03669at 3865.834 kb on + strand, within ECD_03669at 3865.866 kb on + strand, within ECD_03669at 3865.910 kb on + strand, within ECD_03669at 3866.051 kb on + strand, within ECD_03669at 3866.055 kb on + strand, within ECD_03669at 3866.056 kb on - strand, within ECD_03669at 3866.057 kb on + strand, within ECD_03669at 3866.058 kb on - strand, within ECD_03669at 3866.069 kb on + strand, within ECD_03669at 3866.083 kb on - strand, within ECD_03669at 3866.083 kb on - strand, within ECD_03669at 3866.176 kb on - strand, within ECD_03669at 3866.178 kb on + strand, within ECD_03669at 3866.283 kb on - strand, within ECD_03669at 3866.307 kb on - strand, within ECD_03669at 3866.409 kb on + strandat 3866.505 kb on + strandat 3866.517 kb on + strandat 3868.130 kb on + strand, within ECD_03671at 3868.358 kb on + strand, within ECD_03671at 3868.446 kb on + strand, within ECD_03671at 3868.543 kb on + strand, within ECD_03671

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
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3,865,535 - ECD_03669 0.13 -0.2
3,865,621 - ECD_03669 0.21 +0.3
3,865,834 + ECD_03669 0.40 -2.4
3,865,866 + ECD_03669 0.42 -3.8
3,865,910 + ECD_03669 0.46 -2.3
3,866,051 + ECD_03669 0.59 -1.5
3,866,055 + ECD_03669 0.59 -2.6
3,866,056 - ECD_03669 0.59 -2.5
3,866,057 + ECD_03669 0.59 -2.7
3,866,058 - ECD_03669 0.59 -0.8
3,866,069 + ECD_03669 0.60 -3.3
3,866,083 - ECD_03669 0.62 -1.4
3,866,083 - ECD_03669 0.62 -1.8
3,866,176 - ECD_03669 0.70 -1.7
3,866,178 + ECD_03669 0.70 -2.5
3,866,283 - ECD_03669 0.79 -2.1
3,866,307 - ECD_03669 0.81 -1.1
3,866,409 + -1.6
3,866,505 + -1.6
3,866,517 + +0.9
3,868,130 + ECD_03671 0.34 -1.9
3,868,358 + ECD_03671 0.55 -1.4
3,868,446 + ECD_03671 0.63 -1.7
3,868,543 + ECD_03671 0.72 -0.3

Or see this region's nucleotide sequence