Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03536 and ECD_03537 overlap by 103 nucleotides ECD_03537 and ECD_03538 overlap by 4 nucleotides ECD_03538 and ECD_03539 overlap by 34 nucleotides ECD_03539 and ECD_03540 are separated by 84 nucleotides
ECD_03536: ECD_03536 - IS30 transposase, at 3,721,519 to 3,722,643
_03536
ECD_03537: ECD_03537 - putative uncharacterized protein, yeeV-like protein, at 3,722,541 to 3,722,906
_03537
ECD_03538: ECD_03538 - hypothetical protein, at 3,722,903 to 3,723,391
_03538
ECD_03539: ECD_03539 - Aec78, at 3,723,358 to 3,723,600
_03539
ECD_03540: ECD_03540 - hypothetical protein, at 3,723,685 to 3,724,530
_03540
Position (kb)
3722
3723
3724 Strain fitness (log2 ratio)
-1
0
1 at 3721.905 kb on - strand, within ECD_03536 at 3721.962 kb on - strand, within ECD_03536 at 3721.962 kb on - strand, within ECD_03536 at 3721.962 kb on - strand, within ECD_03536 at 3722.039 kb on - strand, within ECD_03536 at 3722.060 kb on + strand, within ECD_03536 at 3722.073 kb on + strand, within ECD_03536 at 3722.073 kb on + strand, within ECD_03536 at 3722.074 kb on - strand, within ECD_03536 at 3722.074 kb on - strand, within ECD_03536 at 3722.075 kb on + strand, within ECD_03536 at 3722.075 kb on + strand, within ECD_03536 at 3722.075 kb on + strand, within ECD_03536 at 3722.076 kb on - strand, within ECD_03536 at 3722.098 kb on - strand, within ECD_03536 at 3722.142 kb on + strand, within ECD_03536 at 3722.148 kb on + strand, within ECD_03536 at 3722.149 kb on - strand, within ECD_03536 at 3722.149 kb on - strand, within ECD_03536 at 3722.153 kb on + strand, within ECD_03536 at 3722.153 kb on + strand, within ECD_03536 at 3722.153 kb on + strand, within ECD_03536 at 3722.154 kb on - strand, within ECD_03536 at 3722.154 kb on - strand, within ECD_03536 at 3722.154 kb on - strand, within ECD_03536 at 3722.231 kb on + strand, within ECD_03536 at 3722.232 kb on - strand, within ECD_03536 at 3722.256 kb on + strand, within ECD_03536 at 3722.257 kb on - strand, within ECD_03536 at 3722.258 kb on + strand, within ECD_03536 at 3722.258 kb on + strand, within ECD_03536 at 3722.259 kb on - strand, within ECD_03536 at 3722.288 kb on - strand, within ECD_03536 at 3722.289 kb on + strand, within ECD_03536 at 3722.289 kb on + strand, within ECD_03536 at 3722.424 kb on - strand, within ECD_03536 at 3722.430 kb on + strand, within ECD_03536 at 3722.513 kb on + strand, within ECD_03536 at 3722.524 kb on + strand, within ECD_03536 at 3722.684 kb on + strand, within ECD_03537 at 3722.685 kb on - strand, within ECD_03537 at 3722.746 kb on + strand, within ECD_03537 at 3722.746 kb on + strand, within ECD_03537 at 3722.751 kb on - strand, within ECD_03537 at 3722.807 kb on + strand, within ECD_03537 at 3722.807 kb on + strand, within ECD_03537 at 3722.853 kb on + strand, within ECD_03537 at 3722.854 kb on - strand, within ECD_03537 at 3722.863 kb on + strand, within ECD_03537 at 3722.863 kb on + strand, within ECD_03537 at 3722.867 kb on + strand, within ECD_03537 at 3722.867 kb on + strand, within ECD_03537 at 3722.867 kb on + strand, within ECD_03537 at 3722.868 kb on + strand, within ECD_03537 at 3722.868 kb on - strand, within ECD_03537 at 3722.990 kb on - strand, within ECD_03538 at 3723.033 kb on + strand, within ECD_03538 at 3723.034 kb on - strand, within ECD_03538 at 3723.034 kb on - strand, within ECD_03538 at 3723.074 kb on - strand, within ECD_03538 at 3723.105 kb on + strand, within ECD_03538 at 3723.105 kb on + strand, within ECD_03538 at 3723.106 kb on - strand, within ECD_03538 at 3723.106 kb on - strand, within ECD_03538 at 3723.106 kb on - strand, within ECD_03538 at 3723.124 kb on + strand, within ECD_03538 at 3723.124 kb on + strand, within ECD_03538 at 3723.125 kb on - strand, within ECD_03538 at 3723.172 kb on + strand, within ECD_03538 at 3723.225 kb on + strand, within ECD_03538 at 3723.226 kb on - strand, within ECD_03538 at 3723.310 kb on + strand, within ECD_03538 at 3723.321 kb on - strand, within ECD_03538 at 3723.643 kb on - strand at 3723.684 kb on - strand at 3723.684 kb on - strand at 3723.834 kb on - strand, within ECD_03540 at 3724.026 kb on + strand, within ECD_03540 at 3724.026 kb on + strand, within ECD_03540 at 3724.026 kb on + strand, within ECD_03540 at 3724.049 kb on - strand, within ECD_03540 at 3724.049 kb on - strand, within ECD_03540 at 3724.143 kb on + strand, within ECD_03540 at 3724.143 kb on + strand, within ECD_03540 at 3724.143 kb on + strand, within ECD_03540 at 3724.144 kb on - strand, within ECD_03540 at 3724.351 kb on - strand, within ECD_03540
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10 remove 3,721,905 - ECD_03536 0.34 -0.3 3,721,962 - ECD_03536 0.39 -0.3 3,721,962 - ECD_03536 0.39 -0.6 3,721,962 - ECD_03536 0.39 -0.7 3,722,039 - ECD_03536 0.46 -0.4 3,722,060 + ECD_03536 0.48 -0.4 3,722,073 + ECD_03536 0.49 -0.4 3,722,073 + ECD_03536 0.49 +0.3 3,722,074 - ECD_03536 0.49 -0.7 3,722,074 - ECD_03536 0.49 -0.5 3,722,075 + ECD_03536 0.49 -0.6 3,722,075 + ECD_03536 0.49 +0.1 3,722,075 + ECD_03536 0.49 +0.8 3,722,076 - ECD_03536 0.50 -0.1 3,722,098 - ECD_03536 0.51 -1.0 3,722,142 + ECD_03536 0.55 +0.1 3,722,148 + ECD_03536 0.56 -0.3 3,722,149 - ECD_03536 0.56 -0.9 3,722,149 - ECD_03536 0.56 +0.1 3,722,153 + ECD_03536 0.56 -0.3 3,722,153 + ECD_03536 0.56 -0.5 3,722,153 + ECD_03536 0.56 -0.5 3,722,154 - ECD_03536 0.56 +0.4 3,722,154 - ECD_03536 0.56 -0.4 3,722,154 - ECD_03536 0.56 -1.1 3,722,231 + ECD_03536 0.63 -0.7 3,722,232 - ECD_03536 0.63 -0.3 3,722,256 + ECD_03536 0.66 -1.5 3,722,257 - ECD_03536 0.66 +0.3 3,722,258 + ECD_03536 0.66 -0.1 3,722,258 + ECD_03536 0.66 -0.3 3,722,259 - ECD_03536 0.66 -0.6 3,722,288 - ECD_03536 0.68 -0.4 3,722,289 + ECD_03536 0.68 +0.1 3,722,289 + ECD_03536 0.68 +0.2 3,722,424 - ECD_03536 0.80 -0.3 3,722,430 + ECD_03536 0.81 +0.2 3,722,513 + ECD_03536 0.88 +0.0 3,722,524 + ECD_03536 0.89 -0.2 3,722,684 + ECD_03537 0.39 +0.6 3,722,685 - ECD_03537 0.39 -0.3 3,722,746 + ECD_03537 0.56 -0.3 3,722,746 + ECD_03537 0.56 +0.2 3,722,751 - ECD_03537 0.57 +0.1 3,722,807 + ECD_03537 0.73 +0.1 3,722,807 + ECD_03537 0.73 +0.2 3,722,853 + ECD_03537 0.85 -0.3 3,722,854 - ECD_03537 0.86 -0.5 3,722,863 + ECD_03537 0.88 -1.0 3,722,863 + ECD_03537 0.88 -0.2 3,722,867 + ECD_03537 0.89 -0.4 3,722,867 + ECD_03537 0.89 -0.9 3,722,867 + ECD_03537 0.89 -0.1 3,722,868 + ECD_03537 0.89 +0.0 3,722,868 - ECD_03537 0.89 -0.4 3,722,990 - ECD_03538 0.18 +0.2 3,723,033 + ECD_03538 0.27 -0.4 3,723,034 - ECD_03538 0.27 -0.0 3,723,034 - ECD_03538 0.27 -0.1 3,723,074 - ECD_03538 0.35 +0.4 3,723,105 + ECD_03538 0.41 -0.2 3,723,105 + ECD_03538 0.41 +0.2 3,723,106 - ECD_03538 0.42 +0.2 3,723,106 - ECD_03538 0.42 +0.4 3,723,106 - ECD_03538 0.42 +0.1 3,723,124 + ECD_03538 0.45 -0.1 3,723,124 + ECD_03538 0.45 -0.3 3,723,125 - ECD_03538 0.45 +0.2 3,723,172 + ECD_03538 0.55 -0.1 3,723,225 + ECD_03538 0.66 +0.1 3,723,226 - ECD_03538 0.66 -0.1 3,723,310 + ECD_03538 0.83 -0.6 3,723,321 - ECD_03538 0.85 -0.7 3,723,643 - +0.0 3,723,684 - -0.8 3,723,684 - +0.1 3,723,834 - ECD_03540 0.18 +0.0 3,724,026 + ECD_03540 0.40 +0.2 3,724,026 + ECD_03540 0.40 -0.2 3,724,026 + ECD_03540 0.40 +0.1 3,724,049 - ECD_03540 0.43 +0.7 3,724,049 - ECD_03540 0.43 -0.0 3,724,143 + ECD_03540 0.54 -0.6 3,724,143 + ECD_03540 0.54 -0.8 3,724,143 + ECD_03540 0.54 -0.3 3,724,144 - ECD_03540 0.54 -0.3 3,724,351 - ECD_03540 0.79 -0.0
Or see this region's nucleotide sequence