Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02463 and ECD_02464 are separated by 197 nucleotides ECD_02464 and ECD_02465 overlap by 4 nucleotides ECD_02465 and ECD_02466 overlap by 1 nucleotides ECD_02466 and ECD_02467 are separated by 32 nucleotides
ECD_02463: ECD_02463 - back-translocating elongation factor EF4, GTPase, at 2,571,925 to 2,573,724
_02463
ECD_02464: ECD_02464 - SoxR iron-sulfur cluster reduction factor component, at 2,573,922 to 2,574,401
_02464
ECD_02465: ECD_02465 - anti-sigma E factor, binds RseA, at 2,574,398 to 2,575,354
_02465
ECD_02466: ECD_02466 - anti-sigma factor, at 2,575,354 to 2,576,004
_02466
ECD_02467: ECD_02467 - RNA polymerase sigma E factor, at 2,576,037 to 2,576,612
_02467
Position (kb)
2574
2575
2576 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2573.656 kb on - strand at 2573.696 kb on - strand at 2573.710 kb on - strand at 2573.730 kb on - strand at 2573.736 kb on - strand at 2573.820 kb on + strand at 2573.821 kb on - strand at 2573.825 kb on + strand at 2573.852 kb on + strand at 2573.852 kb on + strand at 2574.023 kb on + strand, within ECD_02464 at 2574.032 kb on - strand, within ECD_02464 at 2574.081 kb on + strand, within ECD_02464 at 2574.082 kb on - strand, within ECD_02464 at 2574.156 kb on - strand, within ECD_02464 at 2574.156 kb on - strand, within ECD_02464 at 2574.156 kb on - strand, within ECD_02464 at 2574.158 kb on - strand, within ECD_02464 at 2574.177 kb on - strand, within ECD_02464 at 2574.177 kb on - strand, within ECD_02464 at 2574.255 kb on - strand, within ECD_02464 at 2574.255 kb on - strand, within ECD_02464 at 2574.278 kb on + strand, within ECD_02464 at 2574.419 kb on - strand at 2574.500 kb on - strand, within ECD_02465 at 2574.500 kb on - strand, within ECD_02465 at 2574.500 kb on - strand, within ECD_02465 at 2574.500 kb on - strand, within ECD_02465 at 2574.500 kb on - strand, within ECD_02465 at 2574.595 kb on - strand, within ECD_02465 at 2574.662 kb on - strand, within ECD_02465 at 2574.764 kb on - strand, within ECD_02465 at 2574.764 kb on - strand, within ECD_02465 at 2574.888 kb on + strand, within ECD_02465 at 2574.889 kb on - strand, within ECD_02465 at 2574.889 kb on - strand, within ECD_02465 at 2574.889 kb on - strand, within ECD_02465 at 2574.889 kb on - strand, within ECD_02465 at 2574.889 kb on - strand, within ECD_02465 at 2574.901 kb on + strand, within ECD_02465 at 2574.902 kb on - strand, within ECD_02465 at 2574.982 kb on - strand, within ECD_02465 at 2575.008 kb on + strand, within ECD_02465 at 2575.009 kb on - strand, within ECD_02465 at 2575.009 kb on - strand, within ECD_02465 at 2575.039 kb on - strand, within ECD_02465 at 2575.039 kb on - strand, within ECD_02465 at 2575.202 kb on - strand, within ECD_02465 at 2575.263 kb on - strand at 2575.263 kb on - strand at 2575.316 kb on - strand at 2575.356 kb on - strand at 2575.373 kb on - strand at 2575.397 kb on - strand at 2575.397 kb on - strand at 2575.507 kb on + strand, within ECD_02466
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10 remove 2,573,656 - -0.2 2,573,696 - +0.5 2,573,710 - -0.5 2,573,730 - +1.1 2,573,736 - +0.2 2,573,820 + -0.1 2,573,821 - +0.3 2,573,825 + -0.1 2,573,852 + -1.5 2,573,852 + -0.9 2,574,023 + ECD_02464 0.21 -0.2 2,574,032 - ECD_02464 0.23 -1.1 2,574,081 + ECD_02464 0.33 -1.3 2,574,082 - ECD_02464 0.33 +0.1 2,574,156 - ECD_02464 0.49 +0.2 2,574,156 - ECD_02464 0.49 +1.2 2,574,156 - ECD_02464 0.49 +0.5 2,574,158 - ECD_02464 0.49 +0.2 2,574,177 - ECD_02464 0.53 +0.7 2,574,177 - ECD_02464 0.53 -1.0 2,574,255 - ECD_02464 0.69 -0.2 2,574,255 - ECD_02464 0.69 +0.1 2,574,278 + ECD_02464 0.74 -1.7 2,574,419 - +1.1 2,574,500 - ECD_02465 0.11 +1.3 2,574,500 - ECD_02465 0.11 +0.3 2,574,500 - ECD_02465 0.11 +0.6 2,574,500 - ECD_02465 0.11 +1.3 2,574,500 - ECD_02465 0.11 +0.7 2,574,595 - ECD_02465 0.21 +0.5 2,574,662 - ECD_02465 0.28 +0.2 2,574,764 - ECD_02465 0.38 +0.8 2,574,764 - ECD_02465 0.38 +0.4 2,574,888 + ECD_02465 0.51 -0.6 2,574,889 - ECD_02465 0.51 +0.5 2,574,889 - ECD_02465 0.51 +0.2 2,574,889 - ECD_02465 0.51 +0.3 2,574,889 - ECD_02465 0.51 +0.6 2,574,889 - ECD_02465 0.51 -0.5 2,574,901 + ECD_02465 0.53 -1.1 2,574,902 - ECD_02465 0.53 +0.4 2,574,982 - ECD_02465 0.61 +1.0 2,575,008 + ECD_02465 0.64 -0.5 2,575,009 - ECD_02465 0.64 +0.2 2,575,009 - ECD_02465 0.64 -0.1 2,575,039 - ECD_02465 0.67 +0.5 2,575,039 - ECD_02465 0.67 -0.7 2,575,202 - ECD_02465 0.84 +0.6 2,575,263 - +1.0 2,575,263 - -0.5 2,575,316 - +1.0 2,575,356 - +1.2 2,575,373 - -0.7 2,575,397 - +0.7 2,575,397 - +3.6 2,575,507 + ECD_02466 0.24 -0.3
Or see this region's nucleotide sequence