Strain Fitness in Escherichia coli BL21 around ECD_02465

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02463 and ECD_02464 are separated by 197 nucleotidesECD_02464 and ECD_02465 overlap by 4 nucleotidesECD_02465 and ECD_02466 overlap by 1 nucleotidesECD_02466 and ECD_02467 are separated by 32 nucleotides ECD_02463: ECD_02463 - back-translocating elongation factor EF4, GTPase, at 2,571,925 to 2,573,724 _02463 ECD_02464: ECD_02464 - SoxR iron-sulfur cluster reduction factor component, at 2,573,922 to 2,574,401 _02464 ECD_02465: ECD_02465 - anti-sigma E factor, binds RseA, at 2,574,398 to 2,575,354 _02465 ECD_02466: ECD_02466 - anti-sigma factor, at 2,575,354 to 2,576,004 _02466 ECD_02467: ECD_02467 - RNA polymerase sigma E factor, at 2,576,037 to 2,576,612 _02467 Position (kb) 2574 2575 2576Strain fitness (log2 ratio) -1 0 1 2 3at 2573.656 kb on - strandat 2573.696 kb on - strandat 2573.710 kb on - strandat 2573.730 kb on - strandat 2573.736 kb on - strandat 2573.820 kb on + strandat 2573.821 kb on - strandat 2573.825 kb on + strandat 2573.852 kb on + strandat 2573.852 kb on + strandat 2574.023 kb on + strand, within ECD_02464at 2574.032 kb on - strand, within ECD_02464at 2574.081 kb on + strand, within ECD_02464at 2574.082 kb on - strand, within ECD_02464at 2574.156 kb on - strand, within ECD_02464at 2574.156 kb on - strand, within ECD_02464at 2574.156 kb on - strand, within ECD_02464at 2574.158 kb on - strand, within ECD_02464at 2574.177 kb on - strand, within ECD_02464at 2574.177 kb on - strand, within ECD_02464at 2574.255 kb on - strand, within ECD_02464at 2574.255 kb on - strand, within ECD_02464at 2574.278 kb on + strand, within ECD_02464at 2574.419 kb on - strandat 2574.500 kb on - strand, within ECD_02465at 2574.500 kb on - strand, within ECD_02465at 2574.500 kb on - strand, within ECD_02465at 2574.500 kb on - strand, within ECD_02465at 2574.500 kb on - strand, within ECD_02465at 2574.595 kb on - strand, within ECD_02465at 2574.662 kb on - strand, within ECD_02465at 2574.764 kb on - strand, within ECD_02465at 2574.764 kb on - strand, within ECD_02465at 2574.888 kb on + strand, within ECD_02465at 2574.889 kb on - strand, within ECD_02465at 2574.889 kb on - strand, within ECD_02465at 2574.889 kb on - strand, within ECD_02465at 2574.889 kb on - strand, within ECD_02465at 2574.889 kb on - strand, within ECD_02465at 2574.901 kb on + strand, within ECD_02465at 2574.902 kb on - strand, within ECD_02465at 2574.982 kb on - strand, within ECD_02465at 2575.008 kb on + strand, within ECD_02465at 2575.009 kb on - strand, within ECD_02465at 2575.009 kb on - strand, within ECD_02465at 2575.039 kb on - strand, within ECD_02465at 2575.039 kb on - strand, within ECD_02465at 2575.202 kb on - strand, within ECD_02465at 2575.263 kb on - strandat 2575.263 kb on - strandat 2575.316 kb on - strandat 2575.356 kb on - strandat 2575.373 kb on - strandat 2575.397 kb on - strandat 2575.397 kb on - strandat 2575.507 kb on + strand, within ECD_02466

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
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2,573,656 - -0.2
2,573,696 - +0.5
2,573,710 - -0.5
2,573,730 - +1.1
2,573,736 - +0.2
2,573,820 + -0.1
2,573,821 - +0.3
2,573,825 + -0.1
2,573,852 + -1.5
2,573,852 + -0.9
2,574,023 + ECD_02464 0.21 -0.2
2,574,032 - ECD_02464 0.23 -1.1
2,574,081 + ECD_02464 0.33 -1.3
2,574,082 - ECD_02464 0.33 +0.1
2,574,156 - ECD_02464 0.49 +0.2
2,574,156 - ECD_02464 0.49 +1.2
2,574,156 - ECD_02464 0.49 +0.5
2,574,158 - ECD_02464 0.49 +0.2
2,574,177 - ECD_02464 0.53 +0.7
2,574,177 - ECD_02464 0.53 -1.0
2,574,255 - ECD_02464 0.69 -0.2
2,574,255 - ECD_02464 0.69 +0.1
2,574,278 + ECD_02464 0.74 -1.7
2,574,419 - +1.1
2,574,500 - ECD_02465 0.11 +1.3
2,574,500 - ECD_02465 0.11 +0.3
2,574,500 - ECD_02465 0.11 +0.6
2,574,500 - ECD_02465 0.11 +1.3
2,574,500 - ECD_02465 0.11 +0.7
2,574,595 - ECD_02465 0.21 +0.5
2,574,662 - ECD_02465 0.28 +0.2
2,574,764 - ECD_02465 0.38 +0.8
2,574,764 - ECD_02465 0.38 +0.4
2,574,888 + ECD_02465 0.51 -0.6
2,574,889 - ECD_02465 0.51 +0.5
2,574,889 - ECD_02465 0.51 +0.2
2,574,889 - ECD_02465 0.51 +0.3
2,574,889 - ECD_02465 0.51 +0.6
2,574,889 - ECD_02465 0.51 -0.5
2,574,901 + ECD_02465 0.53 -1.1
2,574,902 - ECD_02465 0.53 +0.4
2,574,982 - ECD_02465 0.61 +1.0
2,575,008 + ECD_02465 0.64 -0.5
2,575,009 - ECD_02465 0.64 +0.2
2,575,009 - ECD_02465 0.64 -0.1
2,575,039 - ECD_02465 0.67 +0.5
2,575,039 - ECD_02465 0.67 -0.7
2,575,202 - ECD_02465 0.84 +0.6
2,575,263 - +1.0
2,575,263 - -0.5
2,575,316 - +1.0
2,575,356 - +1.2
2,575,373 - -0.7
2,575,397 - +0.7
2,575,397 - +3.6
2,575,507 + ECD_02466 0.24 -0.3

Or see this region's nucleotide sequence