Strain Fitness in Escherichia coli BL21 around ECD_02366

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02364 and ECD_02365 are separated by 109 nucleotidesECD_02365 and ECD_02366 are separated by 73 nucleotidesECD_02366 and ECD_02367 are separated by 14 nucleotides ECD_02364: ECD_02364 - putative membrane protein, UPF0370 family, at 2,457,251 to 2,457,451 _02364 ECD_02365: ECD_02365 - palmitoyl-CoA esterase activity, uncertain physiological substrate, at 2,457,561 to 2,458,259 _02365 ECD_02366: ECD_02366 - elongator methionine tRNA (ac4C34) acetyltransferase, at 2,458,333 to 2,460,348 _02366 ECD_02367: ECD_02367 - putative neutral zinc metallopeptidase, at 2,460,363 to 2,461,226 _02367 Position (kb) 2458 2459 2460 2461Strain fitness (log2 ratio) -2 -1 0 1at 2457.346 kb on + strand, within ECD_02364at 2457.449 kb on + strandat 2457.538 kb on + strandat 2457.551 kb on - strandat 2457.597 kb on - strandat 2457.607 kb on - strandat 2457.638 kb on + strand, within ECD_02365at 2457.640 kb on + strand, within ECD_02365at 2457.858 kb on - strand, within ECD_02365at 2457.897 kb on - strand, within ECD_02365at 2458.343 kb on - strandat 2458.392 kb on + strandat 2458.392 kb on + strandat 2458.471 kb on - strandat 2458.471 kb on - strandat 2458.474 kb on + strandat 2458.475 kb on - strandat 2458.565 kb on - strand, within ECD_02366at 2458.775 kb on + strand, within ECD_02366at 2458.776 kb on - strand, within ECD_02366at 2458.899 kb on + strand, within ECD_02366at 2458.921 kb on - strand, within ECD_02366at 2459.248 kb on + strand, within ECD_02366at 2459.304 kb on + strand, within ECD_02366at 2459.798 kb on - strand, within ECD_02366at 2459.919 kb on + strand, within ECD_02366at 2460.145 kb on + strand, within ECD_02366at 2460.238 kb on - strandat 2460.238 kb on - strandat 2460.238 kb on - strandat 2460.244 kb on - strandat 2460.244 kb on - strandat 2460.471 kb on + strand, within ECD_02367at 2460.578 kb on + strand, within ECD_02367at 2460.578 kb on + strand, within ECD_02367at 2460.578 kb on + strand, within ECD_02367at 2460.579 kb on - strand, within ECD_02367at 2460.579 kb on - strand, within ECD_02367at 2460.581 kb on + strand, within ECD_02367at 2460.581 kb on + strand, within ECD_02367at 2460.582 kb on - strand, within ECD_02367at 2460.634 kb on - strand, within ECD_02367at 2460.634 kb on - strand, within ECD_02367at 2460.696 kb on + strand, within ECD_02367at 2460.790 kb on + strand, within ECD_02367at 2460.790 kb on + strand, within ECD_02367at 2460.790 kb on + strand, within ECD_02367at 2460.791 kb on - strand, within ECD_02367at 2460.890 kb on - strand, within ECD_02367at 2460.890 kb on - strand, within ECD_02367at 2460.914 kb on - strand, within ECD_02367at 2461.079 kb on - strand, within ECD_02367at 2461.108 kb on - strand, within ECD_02367at 2461.231 kb on - strandat 2461.231 kb on - strandat 2461.231 kb on - strandat 2461.231 kb on - strandat 2461.241 kb on + strandat 2461.252 kb on + strandat 2461.253 kb on - strandat 2461.335 kb on + strandat 2461.335 kb on + strandat 2461.335 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
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2,457,346 + ECD_02364 0.47 -1.2
2,457,449 + -0.3
2,457,538 + -2.1
2,457,551 - +0.1
2,457,597 - -1.0
2,457,607 - -0.4
2,457,638 + ECD_02365 0.11 -1.9
2,457,640 + ECD_02365 0.11 -1.1
2,457,858 - ECD_02365 0.42 -1.6
2,457,897 - ECD_02365 0.48 -1.1
2,458,343 - -0.4
2,458,392 + -0.5
2,458,392 + -0.6
2,458,471 - -0.0
2,458,471 - -0.5
2,458,474 + -1.3
2,458,475 - -2.2
2,458,565 - ECD_02366 0.12 -1.2
2,458,775 + ECD_02366 0.22 -2.3
2,458,776 - ECD_02366 0.22 -2.2
2,458,899 + ECD_02366 0.28 +0.6
2,458,921 - ECD_02366 0.29 -1.4
2,459,248 + ECD_02366 0.45 -1.1
2,459,304 + ECD_02366 0.48 +0.1
2,459,798 - ECD_02366 0.73 -1.1
2,459,919 + ECD_02366 0.79 -1.7
2,460,145 + ECD_02366 0.90 +0.9
2,460,238 - -0.7
2,460,238 - +0.3
2,460,238 - -2.0
2,460,244 - -2.2
2,460,244 - -0.6
2,460,471 + ECD_02367 0.12 -0.5
2,460,578 + ECD_02367 0.25 -0.5
2,460,578 + ECD_02367 0.25 -2.4
2,460,578 + ECD_02367 0.25 -1.6
2,460,579 - ECD_02367 0.25 -0.9
2,460,579 - ECD_02367 0.25 -0.5
2,460,581 + ECD_02367 0.25 -2.4
2,460,581 + ECD_02367 0.25 -0.9
2,460,582 - ECD_02367 0.25 -0.3
2,460,634 - ECD_02367 0.31 +0.4
2,460,634 - ECD_02367 0.31 -0.4
2,460,696 + ECD_02367 0.39 -1.1
2,460,790 + ECD_02367 0.49 -0.9
2,460,790 + ECD_02367 0.49 -0.0
2,460,790 + ECD_02367 0.49 -0.9
2,460,791 - ECD_02367 0.50 +0.1
2,460,890 - ECD_02367 0.61 +0.6
2,460,890 - ECD_02367 0.61 -0.7
2,460,914 - ECD_02367 0.64 -0.1
2,461,079 - ECD_02367 0.83 -0.9
2,461,108 - ECD_02367 0.86 -1.1
2,461,231 - -1.7
2,461,231 - -0.4
2,461,231 - -0.6
2,461,231 - -0.7
2,461,241 + -1.0
2,461,252 + -0.2
2,461,253 - -0.7
2,461,335 + +0.2
2,461,335 + -0.8
2,461,335 + -0.4

Or see this region's nucleotide sequence