Strain Fitness in Escherichia coli BL21 around ECD_02166

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02165 and ECD_02166 are separated by 4 nucleotidesECD_02166 and ECD_02167 are separated by 272 nucleotides ECD_02165: ECD_02165 - periplasmic glycerophosphodiester phosphodiesterase, at 2,240,304 to 2,241,380 _02165 ECD_02166: ECD_02166 - sn-glycerol-3-phosphate transporter, at 2,241,385 to 2,242,743 _02166 ECD_02167: ECD_02167 - anaerobic sn-glycerol-3-phosphate dehydrogenase, large FAD/NAD(P)-binding subunit, at 2,243,016 to 2,244,644 _02167 Position (kb) 2241 2242 2243Strain fitness (log2 ratio) -3 -2 -1 0 1at 2240.391 kb on + strandat 2240.392 kb on - strandat 2240.392 kb on - strandat 2240.392 kb on - strandat 2240.501 kb on + strand, within ECD_02165at 2240.535 kb on - strand, within ECD_02165at 2240.535 kb on - strand, within ECD_02165at 2240.540 kb on - strand, within ECD_02165at 2240.583 kb on - strand, within ECD_02165at 2240.609 kb on - strand, within ECD_02165at 2240.609 kb on - strand, within ECD_02165at 2240.615 kb on - strand, within ECD_02165at 2241.077 kb on - strand, within ECD_02165at 2241.200 kb on - strand, within ECD_02165at 2241.243 kb on - strand, within ECD_02165at 2241.331 kb on - strandat 2241.331 kb on - strandat 2241.333 kb on - strandat 2241.333 kb on - strandat 2241.333 kb on - strandat 2241.333 kb on - strandat 2241.333 kb on - strandat 2241.410 kb on - strandat 2241.528 kb on - strand, within ECD_02166at 2241.598 kb on - strand, within ECD_02166at 2241.660 kb on - strand, within ECD_02166at 2241.660 kb on - strand, within ECD_02166at 2241.685 kb on - strand, within ECD_02166at 2241.851 kb on + strand, within ECD_02166at 2241.860 kb on + strand, within ECD_02166at 2241.877 kb on - strand, within ECD_02166at 2241.947 kb on + strand, within ECD_02166at 2242.001 kb on + strand, within ECD_02166at 2242.002 kb on - strand, within ECD_02166at 2242.170 kb on + strand, within ECD_02166at 2242.171 kb on - strand, within ECD_02166at 2242.171 kb on - strand, within ECD_02166at 2242.171 kb on - strand, within ECD_02166at 2242.172 kb on + strand, within ECD_02166at 2242.172 kb on + strand, within ECD_02166at 2242.311 kb on + strand, within ECD_02166at 2242.311 kb on + strand, within ECD_02166at 2242.312 kb on - strand, within ECD_02166at 2242.591 kb on - strand, within ECD_02166at 2243.051 kb on + strandat 2243.051 kb on + strandat 2243.376 kb on - strand, within ECD_02167at 2243.586 kb on - strand, within ECD_02167

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
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2,240,391 + +1.3
2,240,392 - +1.7
2,240,392 - +0.2
2,240,392 - -0.4
2,240,501 + ECD_02165 0.18 -2.3
2,240,535 - ECD_02165 0.21 -0.7
2,240,535 - ECD_02165 0.21 -1.2
2,240,540 - ECD_02165 0.22 -0.1
2,240,583 - ECD_02165 0.26 +0.1
2,240,609 - ECD_02165 0.28 -0.3
2,240,609 - ECD_02165 0.28 +0.4
2,240,615 - ECD_02165 0.29 +0.1
2,241,077 - ECD_02165 0.72 -0.2
2,241,200 - ECD_02165 0.83 -0.9
2,241,243 - ECD_02165 0.87 +0.8
2,241,331 - +0.8
2,241,331 - +0.2
2,241,333 - +0.5
2,241,333 - +0.4
2,241,333 - +0.4
2,241,333 - +0.8
2,241,333 - +0.6
2,241,410 - +0.5
2,241,528 - ECD_02166 0.11 -0.3
2,241,598 - ECD_02166 0.16 +0.5
2,241,660 - ECD_02166 0.20 -0.0
2,241,660 - ECD_02166 0.20 -2.5
2,241,685 - ECD_02166 0.22 +0.6
2,241,851 + ECD_02166 0.34 -1.5
2,241,860 + ECD_02166 0.35 -1.8
2,241,877 - ECD_02166 0.36 +0.7
2,241,947 + ECD_02166 0.41 +0.5
2,242,001 + ECD_02166 0.45 +0.3
2,242,002 - ECD_02166 0.45 +0.6
2,242,170 + ECD_02166 0.58 -2.9
2,242,171 - ECD_02166 0.58 +1.3
2,242,171 - ECD_02166 0.58 -0.8
2,242,171 - ECD_02166 0.58 +0.1
2,242,172 + ECD_02166 0.58 -1.3
2,242,172 + ECD_02166 0.58 -0.4
2,242,311 + ECD_02166 0.68 -1.8
2,242,311 + ECD_02166 0.68 -1.4
2,242,312 - ECD_02166 0.68 +1.2
2,242,591 - ECD_02166 0.89 +0.0
2,243,051 + -0.2
2,243,051 + +0.9
2,243,376 - ECD_02167 0.22 -2.6
2,243,586 - ECD_02167 0.35 +0.3

Or see this region's nucleotide sequence