Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02165 and ECD_02166 are separated by 4 nucleotides ECD_02166 and ECD_02167 are separated by 272 nucleotides
ECD_02165: ECD_02165 - periplasmic glycerophosphodiester phosphodiesterase, at 2,240,304 to 2,241,380
_02165
ECD_02166: ECD_02166 - sn-glycerol-3-phosphate transporter, at 2,241,385 to 2,242,743
_02166
ECD_02167: ECD_02167 - anaerobic sn-glycerol-3-phosphate dehydrogenase, large FAD/NAD(P)-binding subunit, at 2,243,016 to 2,244,644
_02167
Position (kb)
2241
2242
2243 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2240.391 kb on + strand at 2240.392 kb on - strand at 2240.392 kb on - strand at 2240.392 kb on - strand at 2240.501 kb on + strand, within ECD_02165 at 2240.535 kb on - strand, within ECD_02165 at 2240.535 kb on - strand, within ECD_02165 at 2240.540 kb on - strand, within ECD_02165 at 2240.583 kb on - strand, within ECD_02165 at 2240.609 kb on - strand, within ECD_02165 at 2240.609 kb on - strand, within ECD_02165 at 2240.615 kb on - strand, within ECD_02165 at 2241.077 kb on - strand, within ECD_02165 at 2241.200 kb on - strand, within ECD_02165 at 2241.243 kb on - strand, within ECD_02165 at 2241.331 kb on - strand at 2241.331 kb on - strand at 2241.333 kb on - strand at 2241.333 kb on - strand at 2241.333 kb on - strand at 2241.333 kb on - strand at 2241.333 kb on - strand at 2241.410 kb on - strand at 2241.528 kb on - strand, within ECD_02166 at 2241.598 kb on - strand, within ECD_02166 at 2241.660 kb on - strand, within ECD_02166 at 2241.660 kb on - strand, within ECD_02166 at 2241.685 kb on - strand, within ECD_02166 at 2241.851 kb on + strand, within ECD_02166 at 2241.860 kb on + strand, within ECD_02166 at 2241.877 kb on - strand, within ECD_02166 at 2241.947 kb on + strand, within ECD_02166 at 2242.001 kb on + strand, within ECD_02166 at 2242.002 kb on - strand, within ECD_02166 at 2242.170 kb on + strand, within ECD_02166 at 2242.171 kb on - strand, within ECD_02166 at 2242.171 kb on - strand, within ECD_02166 at 2242.171 kb on - strand, within ECD_02166 at 2242.172 kb on + strand, within ECD_02166 at 2242.172 kb on + strand, within ECD_02166 at 2242.311 kb on + strand, within ECD_02166 at 2242.311 kb on + strand, within ECD_02166 at 2242.312 kb on - strand, within ECD_02166 at 2242.591 kb on - strand, within ECD_02166 at 2243.051 kb on + strand at 2243.051 kb on + strand at 2243.376 kb on - strand, within ECD_02167 at 2243.586 kb on - strand, within ECD_02167
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10 remove 2,240,391 + +1.3 2,240,392 - +1.7 2,240,392 - +0.2 2,240,392 - -0.4 2,240,501 + ECD_02165 0.18 -2.3 2,240,535 - ECD_02165 0.21 -0.7 2,240,535 - ECD_02165 0.21 -1.2 2,240,540 - ECD_02165 0.22 -0.1 2,240,583 - ECD_02165 0.26 +0.1 2,240,609 - ECD_02165 0.28 -0.3 2,240,609 - ECD_02165 0.28 +0.4 2,240,615 - ECD_02165 0.29 +0.1 2,241,077 - ECD_02165 0.72 -0.2 2,241,200 - ECD_02165 0.83 -0.9 2,241,243 - ECD_02165 0.87 +0.8 2,241,331 - +0.8 2,241,331 - +0.2 2,241,333 - +0.5 2,241,333 - +0.4 2,241,333 - +0.4 2,241,333 - +0.8 2,241,333 - +0.6 2,241,410 - +0.5 2,241,528 - ECD_02166 0.11 -0.3 2,241,598 - ECD_02166 0.16 +0.5 2,241,660 - ECD_02166 0.20 -0.0 2,241,660 - ECD_02166 0.20 -2.5 2,241,685 - ECD_02166 0.22 +0.6 2,241,851 + ECD_02166 0.34 -1.5 2,241,860 + ECD_02166 0.35 -1.8 2,241,877 - ECD_02166 0.36 +0.7 2,241,947 + ECD_02166 0.41 +0.5 2,242,001 + ECD_02166 0.45 +0.3 2,242,002 - ECD_02166 0.45 +0.6 2,242,170 + ECD_02166 0.58 -2.9 2,242,171 - ECD_02166 0.58 +1.3 2,242,171 - ECD_02166 0.58 -0.8 2,242,171 - ECD_02166 0.58 +0.1 2,242,172 + ECD_02166 0.58 -1.3 2,242,172 + ECD_02166 0.58 -0.4 2,242,311 + ECD_02166 0.68 -1.8 2,242,311 + ECD_02166 0.68 -1.4 2,242,312 - ECD_02166 0.68 +1.2 2,242,591 - ECD_02166 0.89 +0.0 2,243,051 + -0.2 2,243,051 + +0.9 2,243,376 - ECD_02167 0.22 -2.6 2,243,586 - ECD_02167 0.35 +0.3
Or see this region's nucleotide sequence