Strain Fitness in Escherichia coli BL21 around ECD_02120

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02119 and ECD_02120 are separated by 400 nucleotidesECD_02120 and ECD_02121 are separated by 210 nucleotides ECD_02119: ECD_02119 - putative autotransporter outer membrane protein, at 2,181,239 to 2,183,749 _02119 ECD_02120: ECD_02120 - response regulator in two-component regulatory system with NarQ, at 2,184,150 to 2,184,797 _02120 ECD_02121: ECD_02121 - heme lyase, CcmH subunit, at 2,185,008 to 2,186,060 _02121 Position (kb) 2184 2185Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2183.165 kb on + strand, within ECD_02119at 2183.174 kb on - strand, within ECD_02119at 2183.177 kb on - strand, within ECD_02119at 2184.059 kb on + strandat 2184.146 kb on + strandat 2184.146 kb on + strandat 2184.146 kb on + strandat 2184.149 kb on + strandat 2184.223 kb on + strand, within ECD_02120at 2184.465 kb on + strand, within ECD_02120at 2184.562 kb on + strand, within ECD_02120at 2184.709 kb on + strand, within ECD_02120at 2184.713 kb on + strand, within ECD_02120at 2184.796 kb on - strandat 2184.815 kb on + strandat 2185.013 kb on + strandat 2185.055 kb on + strandat 2185.166 kb on - strand, within ECD_02121at 2185.174 kb on - strand, within ECD_02121at 2185.174 kb on - strand, within ECD_02121at 2185.328 kb on - strand, within ECD_02121at 2185.347 kb on - strand, within ECD_02121at 2185.383 kb on - strand, within ECD_02121at 2185.383 kb on - strand, within ECD_02121at 2185.383 kb on - strand, within ECD_02121at 2185.396 kb on - strand, within ECD_02121at 2185.397 kb on + strand, within ECD_02121at 2185.397 kb on + strand, within ECD_02121at 2185.549 kb on + strand, within ECD_02121at 2185.568 kb on - strand, within ECD_02121at 2185.620 kb on - strand, within ECD_02121at 2185.702 kb on + strand, within ECD_02121at 2185.703 kb on - strand, within ECD_02121at 2185.705 kb on - strand, within ECD_02121at 2185.705 kb on - strand, within ECD_02121at 2185.705 kb on - strand, within ECD_02121at 2185.728 kb on - strand, within ECD_02121

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
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2,183,165 + ECD_02119 0.77 +1.9
2,183,174 - ECD_02119 0.77 -1.0
2,183,177 - ECD_02119 0.77 -1.2
2,184,059 + +0.6
2,184,146 + -0.0
2,184,146 + -0.8
2,184,146 + -1.2
2,184,149 + -0.0
2,184,223 + ECD_02120 0.11 -1.4
2,184,465 + ECD_02120 0.49 -2.3
2,184,562 + ECD_02120 0.64 -0.7
2,184,709 + ECD_02120 0.86 -0.4
2,184,713 + ECD_02120 0.87 +0.3
2,184,796 - -3.1
2,184,815 + -0.1
2,185,013 + -1.6
2,185,055 + +0.2
2,185,166 - ECD_02121 0.15 -0.9
2,185,174 - ECD_02121 0.16 -2.2
2,185,174 - ECD_02121 0.16 +0.3
2,185,328 - ECD_02121 0.30 -1.2
2,185,347 - ECD_02121 0.32 -1.1
2,185,383 - ECD_02121 0.36 -1.6
2,185,383 - ECD_02121 0.36 -0.4
2,185,383 - ECD_02121 0.36 -2.3
2,185,396 - ECD_02121 0.37 -0.1
2,185,397 + ECD_02121 0.37 -0.4
2,185,397 + ECD_02121 0.37 -3.6
2,185,549 + ECD_02121 0.51 -0.6
2,185,568 - ECD_02121 0.53 -0.6
2,185,620 - ECD_02121 0.58 +0.0
2,185,702 + ECD_02121 0.66 -1.3
2,185,703 - ECD_02121 0.66 +0.3
2,185,705 - ECD_02121 0.66 -0.4
2,185,705 - ECD_02121 0.66 -0.6
2,185,705 - ECD_02121 0.66 -1.4
2,185,728 - ECD_02121 0.68 +1.0

Or see this region's nucleotide sequence