Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02119 and ECD_02120 are separated by 400 nucleotides ECD_02120 and ECD_02121 are separated by 210 nucleotides
ECD_02119: ECD_02119 - putative autotransporter outer membrane protein, at 2,181,239 to 2,183,749
_02119
ECD_02120: ECD_02120 - response regulator in two-component regulatory system with NarQ, at 2,184,150 to 2,184,797
_02120
ECD_02121: ECD_02121 - heme lyase, CcmH subunit, at 2,185,008 to 2,186,060
_02121
Position (kb)
2184
2185 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2183.165 kb on + strand, within ECD_02119 at 2183.174 kb on - strand, within ECD_02119 at 2183.177 kb on - strand, within ECD_02119 at 2184.059 kb on + strand at 2184.146 kb on + strand at 2184.146 kb on + strand at 2184.146 kb on + strand at 2184.149 kb on + strand at 2184.223 kb on + strand, within ECD_02120 at 2184.465 kb on + strand, within ECD_02120 at 2184.562 kb on + strand, within ECD_02120 at 2184.709 kb on + strand, within ECD_02120 at 2184.713 kb on + strand, within ECD_02120 at 2184.796 kb on - strand at 2184.815 kb on + strand at 2185.013 kb on + strand at 2185.055 kb on + strand at 2185.166 kb on - strand, within ECD_02121 at 2185.174 kb on - strand, within ECD_02121 at 2185.174 kb on - strand, within ECD_02121 at 2185.328 kb on - strand, within ECD_02121 at 2185.347 kb on - strand, within ECD_02121 at 2185.383 kb on - strand, within ECD_02121 at 2185.383 kb on - strand, within ECD_02121 at 2185.383 kb on - strand, within ECD_02121 at 2185.396 kb on - strand, within ECD_02121 at 2185.397 kb on + strand, within ECD_02121 at 2185.397 kb on + strand, within ECD_02121 at 2185.549 kb on + strand, within ECD_02121 at 2185.568 kb on - strand, within ECD_02121 at 2185.620 kb on - strand, within ECD_02121 at 2185.702 kb on + strand, within ECD_02121 at 2185.703 kb on - strand, within ECD_02121 at 2185.705 kb on - strand, within ECD_02121 at 2185.705 kb on - strand, within ECD_02121 at 2185.705 kb on - strand, within ECD_02121 at 2185.728 kb on - strand, within ECD_02121
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10 remove 2,183,165 + ECD_02119 0.77 +1.9 2,183,174 - ECD_02119 0.77 -1.0 2,183,177 - ECD_02119 0.77 -1.2 2,184,059 + +0.6 2,184,146 + -0.0 2,184,146 + -0.8 2,184,146 + -1.2 2,184,149 + -0.0 2,184,223 + ECD_02120 0.11 -1.4 2,184,465 + ECD_02120 0.49 -2.3 2,184,562 + ECD_02120 0.64 -0.7 2,184,709 + ECD_02120 0.86 -0.4 2,184,713 + ECD_02120 0.87 +0.3 2,184,796 - -3.1 2,184,815 + -0.1 2,185,013 + -1.6 2,185,055 + +0.2 2,185,166 - ECD_02121 0.15 -0.9 2,185,174 - ECD_02121 0.16 -2.2 2,185,174 - ECD_02121 0.16 +0.3 2,185,328 - ECD_02121 0.30 -1.2 2,185,347 - ECD_02121 0.32 -1.1 2,185,383 - ECD_02121 0.36 -1.6 2,185,383 - ECD_02121 0.36 -0.4 2,185,383 - ECD_02121 0.36 -2.3 2,185,396 - ECD_02121 0.37 -0.1 2,185,397 + ECD_02121 0.37 -0.4 2,185,397 + ECD_02121 0.37 -3.6 2,185,549 + ECD_02121 0.51 -0.6 2,185,568 - ECD_02121 0.53 -0.6 2,185,620 - ECD_02121 0.58 +0.0 2,185,702 + ECD_02121 0.66 -1.3 2,185,703 - ECD_02121 0.66 +0.3 2,185,705 - ECD_02121 0.66 -0.4 2,185,705 - ECD_02121 0.66 -0.6 2,185,705 - ECD_02121 0.66 -1.4 2,185,728 - ECD_02121 0.68 +1.0
Or see this region's nucleotide sequence