Strain Fitness in Escherichia coli BL21 around ECD_02100

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02099 and ECD_02100 overlap by 4 nucleotidesECD_02100 and ECD_02101 are separated by 154 nucleotidesECD_02101 and ECD_02102 are separated by 222 nucleotides ECD_02099: ECD_02099 - lactose/glucose efflux system, at 2,158,712 to 2,159,893 _02099 ECD_02100: ECD_02100 - UPF0153 cysteine cluster protein, at 2,159,890 to 2,160,144 _02100 ECD_02101: ECD_02101 - elongation factor P-like protein, at 2,160,299 to 2,160,871 _02101 ECD_02102: ECD_02102 - putative NAD-dependent D-mannonate oxidoreductase, at 2,161,094 to 2,162,560 _02102 Position (kb) 2159 2160 2161Strain fitness (log2 ratio) -2 -1 0 1 2at 2159.038 kb on - strand, within ECD_02099at 2159.237 kb on + strand, within ECD_02099at 2159.414 kb on + strand, within ECD_02099at 2159.414 kb on + strand, within ECD_02099at 2159.437 kb on + strand, within ECD_02099at 2159.744 kb on + strand, within ECD_02099at 2159.744 kb on + strand, within ECD_02099at 2159.745 kb on - strand, within ECD_02099at 2159.871 kb on + strandat 2159.949 kb on + strand, within ECD_02100at 2160.055 kb on - strand, within ECD_02100at 2160.087 kb on + strand, within ECD_02100at 2160.144 kb on + strandat 2160.145 kb on - strandat 2160.192 kb on - strandat 2160.406 kb on + strand, within ECD_02101at 2160.406 kb on + strand, within ECD_02101at 2160.414 kb on - strand, within ECD_02101at 2160.453 kb on + strand, within ECD_02101at 2160.510 kb on - strand, within ECD_02101at 2160.566 kb on + strand, within ECD_02101at 2160.577 kb on + strand, within ECD_02101at 2161.094 kb on - strandat 2161.132 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
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2,159,038 - ECD_02099 0.28 -0.3
2,159,237 + ECD_02099 0.44 -2.3
2,159,414 + ECD_02099 0.59 -1.1
2,159,414 + ECD_02099 0.59 -0.7
2,159,437 + ECD_02099 0.61 +0.6
2,159,744 + ECD_02099 0.87 +0.6
2,159,744 + ECD_02099 0.87 +0.5
2,159,745 - ECD_02099 0.87 -1.3
2,159,871 + +1.2
2,159,949 + ECD_02100 0.23 +1.2
2,160,055 - ECD_02100 0.65 +0.4
2,160,087 + ECD_02100 0.77 -0.1
2,160,144 + -0.6
2,160,145 - +1.8
2,160,192 - -0.3
2,160,406 + ECD_02101 0.19 +0.7
2,160,406 + ECD_02101 0.19 -2.1
2,160,414 - ECD_02101 0.20 -0.7
2,160,453 + ECD_02101 0.27 +0.6
2,160,510 - ECD_02101 0.37 -1.5
2,160,566 + ECD_02101 0.47 +1.9
2,160,577 + ECD_02101 0.49 -0.5
2,161,094 - -0.3
2,161,132 - -0.7

Or see this region's nucleotide sequence