Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01955 and ECD_01956 are separated by 2 nucleotides ECD_01956 and ECD_01957 overlap by 4 nucleotides ECD_01957 and ECD_01958 are separated by 2 nucleotides
ECD_01955: ECD_01955 - mannose-1-phosphate guanyltransferase, at 2,022,090 to 2,023,526
_01955
ECD_01956: ECD_01956 - putative glycosyl transferase, at 2,023,529 to 2,024,752
_01956
ECD_01957: ECD_01957 - GDP-mannose mannosyl hydrolase, at 2,024,749 to 2,025,228
_01957
ECD_01958: ECD_01958 - bifunctional GDP-fucose synthetase: GDP-4-dehydro-6-deoxy-D-mannose epimerase/ GDP-4-dehydro-6-L-deoxygalactose reductase, at 2,025,231 to 2,026,196
_01958
Position (kb)
2023
2024
2025 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2022.592 kb on + strand, within ECD_01955 at 2022.592 kb on + strand, within ECD_01955 at 2022.593 kb on - strand, within ECD_01955 at 2022.914 kb on + strand, within ECD_01955 at 2023.069 kb on - strand, within ECD_01955 at 2023.259 kb on + strand, within ECD_01955 at 2023.280 kb on + strand, within ECD_01955 at 2023.281 kb on - strand, within ECD_01955 at 2023.549 kb on + strand at 2023.760 kb on + strand, within ECD_01956 at 2023.869 kb on + strand, within ECD_01956 at 2024.535 kb on + strand, within ECD_01956 at 2024.596 kb on - strand, within ECD_01956 at 2024.626 kb on - strand, within ECD_01956 at 2024.925 kb on - strand, within ECD_01957 at 2024.963 kb on + strand, within ECD_01957 at 2025.233 kb on - strand at 2025.271 kb on + strand at 2025.360 kb on - strand, within ECD_01958 at 2025.748 kb on + strand, within ECD_01958
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10 remove 2,022,592 + ECD_01955 0.35 -3.0 2,022,592 + ECD_01955 0.35 -1.7 2,022,593 - ECD_01955 0.35 -1.5 2,022,914 + ECD_01955 0.57 -0.2 2,023,069 - ECD_01955 0.68 -1.5 2,023,259 + ECD_01955 0.81 +0.4 2,023,280 + ECD_01955 0.83 -0.0 2,023,281 - ECD_01955 0.83 +1.4 2,023,549 + -1.2 2,023,760 + ECD_01956 0.19 +0.2 2,023,869 + ECD_01956 0.28 -0.9 2,024,535 + ECD_01956 0.82 +0.4 2,024,596 - ECD_01956 0.87 +0.9 2,024,626 - ECD_01956 0.90 +0.5 2,024,925 - ECD_01957 0.37 +2.4 2,024,963 + ECD_01957 0.45 -0.1 2,025,233 - +1.4 2,025,271 + -0.4 2,025,360 - ECD_01958 0.13 -0.3 2,025,748 + ECD_01958 0.54 +0.2
Or see this region's nucleotide sequence