Strain Fitness in Escherichia coli BL21 around ECD_01736

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01735 and ECD_01736 are separated by 166 nucleotidesECD_01736 and ECD_01737 are separated by 10 nucleotidesECD_01737 and ECD_01738 are separated by 92 nucleotides ECD_01735: ECD_01735 - protease IV (signal peptide peptidase), at 1,793,213 to 1,795,069 _01735 ECD_01736: ECD_01736 - cytoplasmic L-asparaginase 1, at 1,795,236 to 1,796,252 _01736 ECD_01737: ECD_01737 - nicotinamidase/pyrazinamidase, at 1,796,263 to 1,796,904 _01737 ECD_01738: ECD_01738 - putative MFS sugar transporter, membrane protein, at 1,796,997 to 1,798,355 _01738 Position (kb) 1795 1796 1797Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1794.565 kb on + strand, within ECD_01735at 1794.667 kb on + strand, within ECD_01735at 1794.769 kb on + strand, within ECD_01735at 1795.169 kb on + strandat 1795.197 kb on - strandat 1795.226 kb on + strandat 1795.305 kb on + strandat 1795.306 kb on - strandat 1795.308 kb on - strandat 1795.328 kb on - strandat 1795.397 kb on + strand, within ECD_01736at 1795.521 kb on + strand, within ECD_01736at 1795.793 kb on + strand, within ECD_01736at 1796.054 kb on + strand, within ECD_01736at 1796.251 kb on - strandat 1796.261 kb on + strandat 1796.261 kb on + strandat 1796.262 kb on - strandat 1796.473 kb on - strand, within ECD_01737at 1796.549 kb on + strand, within ECD_01737at 1796.549 kb on + strand, within ECD_01737at 1796.870 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
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1,794,565 + ECD_01735 0.73 -1.8
1,794,667 + ECD_01735 0.78 -1.2
1,794,769 + ECD_01735 0.84 +0.7
1,795,169 + +2.3
1,795,197 - -0.0
1,795,226 + +0.8
1,795,305 + -0.0
1,795,306 - +0.3
1,795,308 - -1.5
1,795,328 - -2.8
1,795,397 + ECD_01736 0.16 -1.6
1,795,521 + ECD_01736 0.28 +2.4
1,795,793 + ECD_01736 0.55 -0.0
1,796,054 + ECD_01736 0.80 -0.5
1,796,251 - -1.9
1,796,261 + -0.3
1,796,261 + +0.2
1,796,262 - -1.4
1,796,473 - ECD_01737 0.33 -0.9
1,796,549 + ECD_01737 0.45 -2.2
1,796,549 + ECD_01737 0.45 +2.6
1,796,870 - -0.7

Or see this region's nucleotide sequence