Strain Fitness in Escherichia coli BL21 around ECD_01681

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01680 and ECD_01681 are separated by 100 nucleotidesECD_01681 and ECD_01682 are separated by 4 nucleotides ECD_01680: ECD_01680 - vitamin B12 ABC transporter permease, at 1,738,587 to 1,739,567 _01680 ECD_01681: ECD_01681 - integration host factor (IHF), DNA-binding protein, alpha subunit, at 1,739,668 to 1,739,967 _01681 ECD_01682: ECD_01682 - phenylalanine tRNA synthetase, beta subunit, at 1,739,972 to 1,742,359 _01682 Position (kb) 1739 1740Strain fitness (log2 ratio) -1 0 1 2at 1739.379 kb on + strand, within ECD_01680at 1739.749 kb on - strand, within ECD_01681at 1739.749 kb on - strand, within ECD_01681at 1739.937 kb on - strand, within ECD_01681

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
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1,739,379 + ECD_01680 0.81 -0.9
1,739,749 - ECD_01681 0.27 +2.3
1,739,749 - ECD_01681 0.27 +1.4
1,739,937 - ECD_01681 0.90 +1.6

Or see this region's nucleotide sequence