Strain Fitness in Escherichia coli BL21 around ECD_01621

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01620 and ECD_01621 are separated by 80 nucleotidesECD_01621 and ECD_01622 are separated by 102 nucleotidesECD_01622 and ECD_01623 are separated by 92 nucleotides ECD_01620: ECD_01620 - chromate reductase, quinone reductase, FMN-linked; N-Ethylmaleimide reductase; old yellow enzyme, at 1,671,855 to 1,672,952 _01620 ECD_01621: ECD_01621 - glyoxalase I, Ni-dependent, at 1,673,033 to 1,673,440 _01621 ECD_01622: ECD_01622 - RNase T; exoribonuclease T; structured DNA 3, at 1,673,543 to 1,674,190 _01622 ECD_01623: ECD_01623 - putative ATP-dependent helicase, at 1,674,283 to 1,678,899 _01623 Position (kb) 1673 1674Strain fitness (log2 ratio) -2 -1 0 1 2at 1672.145 kb on + strand, within ECD_01620at 1672.621 kb on - strand, within ECD_01620at 1672.764 kb on + strand, within ECD_01620at 1672.765 kb on - strand, within ECD_01620at 1672.883 kb on + strandat 1672.986 kb on + strandat 1673.268 kb on + strand, within ECD_01621at 1673.314 kb on + strand, within ECD_01621at 1673.438 kb on + strandat 1673.438 kb on + strandat 1674.231 kb on - strandat 1674.232 kb on + strandat 1674.262 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
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1,672,145 + ECD_01620 0.26 -1.6
1,672,621 - ECD_01620 0.70 -0.5
1,672,764 + ECD_01620 0.83 -0.8
1,672,765 - ECD_01620 0.83 -2.3
1,672,883 + -1.4
1,672,986 + -2.0
1,673,268 + ECD_01621 0.58 -1.3
1,673,314 + ECD_01621 0.69 +2.0
1,673,438 + -0.1
1,673,438 + -0.8
1,674,231 - +0.0
1,674,232 + -2.4
1,674,262 + +0.3

Or see this region's nucleotide sequence