Strain Fitness in Escherichia coli BL21 around ECD_01581

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01580 and ECD_01581 are separated by 142 nucleotidesECD_01581 and ECD_01582 are separated by 198 nucleotides ECD_01580: ECD_01580 - fumarate hydratase (fumarase C),aerobic Class II, at 1,630,382 to 1,631,785 _01580 ECD_01581: ECD_01581 - fumarate hydratase (fumarase A), aerobic Class I, at 1,631,928 to 1,633,574 _01581 ECD_01582: ECD_01582 - mannose-6-phosphate isomerase, at 1,633,773 to 1,634,948 _01582 Position (kb) 1631 1632 1633 1634Strain fitness (log2 ratio) -1 0 1at 1631.061 kb on + strand, within ECD_01580at 1631.547 kb on - strand, within ECD_01580at 1632.083 kb on + strandat 1632.084 kb on - strandat 1632.236 kb on - strand, within ECD_01581at 1632.236 kb on - strand, within ECD_01581at 1632.542 kb on - strand, within ECD_01581at 1632.542 kb on - strand, within ECD_01581at 1632.605 kb on + strand, within ECD_01581at 1632.606 kb on - strand, within ECD_01581at 1632.702 kb on - strand, within ECD_01581at 1632.818 kb on - strand, within ECD_01581at 1632.818 kb on - strand, within ECD_01581at 1632.891 kb on - strand, within ECD_01581at 1632.995 kb on - strand, within ECD_01581at 1632.995 kb on - strand, within ECD_01581at 1633.064 kb on - strand, within ECD_01581at 1633.111 kb on + strand, within ECD_01581at 1633.112 kb on - strand, within ECD_01581at 1633.116 kb on - strand, within ECD_01581at 1633.116 kb on - strand, within ECD_01581at 1633.160 kb on - strand, within ECD_01581at 1633.169 kb on - strand, within ECD_01581at 1633.322 kb on - strand, within ECD_01581at 1633.325 kb on + strand, within ECD_01581at 1633.511 kb on - strandat 1633.514 kb on - strandat 1633.967 kb on + strand, within ECD_01582at 1634.541 kb on + strand, within ECD_01582

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
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1,631,061 + ECD_01580 0.48 -0.9
1,631,547 - ECD_01580 0.83 -1.1
1,632,083 + -1.4
1,632,084 - -0.3
1,632,236 - ECD_01581 0.19 +1.4
1,632,236 - ECD_01581 0.19 +1.5
1,632,542 - ECD_01581 0.37 +0.1
1,632,542 - ECD_01581 0.37 +1.0
1,632,605 + ECD_01581 0.41 -0.2
1,632,606 - ECD_01581 0.41 +1.2
1,632,702 - ECD_01581 0.47 +0.2
1,632,818 - ECD_01581 0.54 +0.3
1,632,818 - ECD_01581 0.54 +0.9
1,632,891 - ECD_01581 0.58 +1.1
1,632,995 - ECD_01581 0.65 -0.8
1,632,995 - ECD_01581 0.65 +0.7
1,633,064 - ECD_01581 0.69 +0.4
1,633,111 + ECD_01581 0.72 -0.7
1,633,112 - ECD_01581 0.72 -1.0
1,633,116 - ECD_01581 0.72 +0.4
1,633,116 - ECD_01581 0.72 -1.7
1,633,160 - ECD_01581 0.75 +1.2
1,633,169 - ECD_01581 0.75 +0.7
1,633,322 - ECD_01581 0.85 +1.3
1,633,325 + ECD_01581 0.85 +0.3
1,633,511 - +1.6
1,633,514 - -0.4
1,633,967 + ECD_01582 0.16 -0.8
1,634,541 + ECD_01582 0.65 -0.6

Or see this region's nucleotide sequence