Strain Fitness in Escherichia coli BL21 around ECD_01473

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01472 and ECD_01473 are separated by 11 nucleotidesECD_01473 and ECD_01474 are separated by 26 nucleotidesECD_01474 and ECD_01475 are separated by 23 nucleotides ECD_01472: ECD_01472 - autoinducer 2 import system permease protein, at 1,552,317 to 1,553,114 _01472 ECD_01473: ECD_01473 - autoinducer 2-binding protein, at 1,553,126 to 1,554,148 _01473 ECD_01474: ECD_01474 - putative autoinducer-2 (AI-2) aldolase, at 1,554,175 to 1,555,050 _01474 ECD_01475: ECD_01475 - autoinducer-2 (AI-2) degrading protein LsrG, at 1,555,074 to 1,555,364 _01475 Position (kb) 1553 1554 1555Strain fitness (log2 ratio) -1 0 1 2at 1552.131 kb on - strandat 1552.753 kb on + strand, within ECD_01472at 1552.753 kb on + strand, within ECD_01472at 1552.942 kb on + strand, within ECD_01472at 1555.073 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
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1,552,131 - +0.2
1,552,753 + ECD_01472 0.55 -0.1
1,552,753 + ECD_01472 0.55 -0.3
1,552,942 + ECD_01472 0.78 -0.3
1,555,073 + +2.7

Or see this region's nucleotide sequence