Strain Fitness in Escherichia coli BL21 around ECD_01111

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01110 and ECD_01111 are separated by 127 nucleotidesECD_01111 and ECD_01112 are separated by 261 nucleotides ECD_01110: ECD_01110 - transcription-repair coupling factor, at 1,173,111 to 1,176,557 _01110 ECD_01111: ECD_01111 - inner membrane protein, at 1,176,685 to 1,177,758 _01111 ECD_01112: ECD_01112 - lipoprotein-releasing system transmembrane protein, at 1,178,020 to 1,179,219 _01112 Position (kb) 1176 1177 1178Strain fitness (log2 ratio) -2 -1 0 1at 1175.721 kb on - strand, within ECD_01110at 1175.734 kb on + strand, within ECD_01110at 1175.829 kb on - strand, within ECD_01110at 1176.225 kb on - strandat 1176.272 kb on - strandat 1176.584 kb on - strandat 1176.606 kb on - strandat 1176.614 kb on + strandat 1176.787 kb on - strandat 1176.917 kb on + strand, within ECD_01111at 1176.918 kb on - strand, within ECD_01111at 1177.045 kb on - strand, within ECD_01111at 1177.322 kb on + strand, within ECD_01111at 1177.567 kb on - strand, within ECD_01111at 1177.718 kb on - strandat 1177.839 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
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1,175,721 - ECD_01110 0.76 -0.7
1,175,734 + ECD_01110 0.76 -1.4
1,175,829 - ECD_01110 0.79 -1.8
1,176,225 - -0.5
1,176,272 - +0.4
1,176,584 - -1.6
1,176,606 - +0.1
1,176,614 + -1.0
1,176,787 - +1.0
1,176,917 + ECD_01111 0.22 -0.6
1,176,918 - ECD_01111 0.22 -0.0
1,177,045 - ECD_01111 0.34 -0.6
1,177,322 + ECD_01111 0.59 -0.1
1,177,567 - ECD_01111 0.82 +0.3
1,177,718 - -1.5
1,177,839 - +0.3

Or see this region's nucleotide sequence