Strain Fitness in Escherichia coli BL21 around ECD_01096

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01095 and ECD_01096 are separated by 10 nucleotidesECD_01096 and ECD_01097 are separated by 294 nucleotides ECD_01095: ECD_01095 - DNA polymerase III, delta prime subunit, at 1,158,329 to 1,159,333 _01095 ECD_01096: ECD_01096 - putative DNase, at 1,159,344 to 1,160,141 _01096 ECD_01097: ECD_01097 - fused glucose-specific PTS enzymes: IIB component/IIC component, at 1,160,436 to 1,161,869 _01097 Position (kb) 1159 1160 1161Strain fitness (log2 ratio) -2 -1 0 1at 1159.292 kb on + strandat 1159.292 kb on + strandat 1159.486 kb on + strand, within ECD_01096at 1159.486 kb on + strand, within ECD_01096at 1159.486 kb on + strand, within ECD_01096at 1159.573 kb on + strand, within ECD_01096at 1159.644 kb on + strand, within ECD_01096at 1159.691 kb on + strand, within ECD_01096at 1160.032 kb on - strand, within ECD_01096at 1160.441 kb on + strandat 1160.801 kb on + strand, within ECD_01097at 1160.849 kb on + strand, within ECD_01097at 1160.849 kb on + strand, within ECD_01097at 1161.027 kb on + strand, within ECD_01097

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
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1,159,292 + -2.4
1,159,292 + +1.0
1,159,486 + ECD_01096 0.18 +1.0
1,159,486 + ECD_01096 0.18 +0.2
1,159,486 + ECD_01096 0.18 -1.6
1,159,573 + ECD_01096 0.29 -2.0
1,159,644 + ECD_01096 0.38 -0.9
1,159,691 + ECD_01096 0.43 -2.6
1,160,032 - ECD_01096 0.86 -0.5
1,160,441 + +0.4
1,160,801 + ECD_01097 0.25 -0.0
1,160,849 + ECD_01097 0.29 +1.1
1,160,849 + ECD_01097 0.29 +0.9
1,161,027 + ECD_01097 0.41 +0.8

Or see this region's nucleotide sequence