Strain Fitness in Escherichia coli BL21 around ECD_01037

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01034 and ECD_01035 are separated by 26 nucleotidesECD_01035 and ECD_01036 are separated by 24 nucleotidesECD_01036 and ECD_01037 are separated by 4 nucleotidesECD_01037 and ECD_01038 are separated by 754 nucleotides ECD_01034: ECD_01034 - curli production assembly/transport outer membrane lipoprotein, at 1,103,418 to 1,104,251 _01034 ECD_01035: ECD_01035 - curli nucleation outer membrane protein, at 1,104,278 to 1,104,694 _01035 ECD_01036: ECD_01036 - curlin secretion specificity factor, at 1,104,719 to 1,105,108 _01036 ECD_01037: ECD_01037 - csgBAC operon transcriptional regulator, at 1,105,113 to 1,105,763 _01037 ECD_01038: ECD_01038 - curlin nucleator protein, minor subunit in curli complex, at 1,106,518 to 1,106,973 _01038 Position (kb) 1105 1106Strain fitness (log2 ratio) -1 0 1at 1105.327 kb on + strand, within ECD_01037at 1106.745 kb on + strand, within ECD_01038

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
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1,105,327 + ECD_01037 0.33 -0.5
1,106,745 + ECD_01038 0.50 +0.5

Or see this region's nucleotide sequence