Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00860 and ECD_00861 are separated by 9 nucleotides ECD_00861 and ECD_00862 overlap by 4 nucleotides ECD_00862 and ECD_00863 are separated by 59 nucleotides
ECD_00860: ECD_00860 - putrescine ABC transporter ATPase, at 899,695 to 900,828
_00860
ECD_00861: ECD_00861 - putrescine ABC transporter permease, at 900,838 to 901,791
_00861
ECD_00862: ECD_00862 - putrescine ABC transporter permease, at 901,788 to 902,633
_00862
ECD_00863: ECD_00863 - DUF2593 family inner membrane protein, at 902,693 to 903,181
_00863
Position (kb) 900
901
902 Strain fitness (log2 ratio) -2
-1
0
1
2 at 899.884 kb on - strand, within ECD_00860 at 899.992 kb on + strand, within ECD_00860 at 900.057 kb on - strand, within ECD_00860 at 900.203 kb on + strand, within ECD_00860 at 900.204 kb on - strand, within ECD_00860 at 900.407 kb on - strand, within ECD_00860 at 900.420 kb on + strand, within ECD_00860 at 900.633 kb on + strand, within ECD_00860 at 900.656 kb on + strand, within ECD_00860 at 900.732 kb on - strand at 901.036 kb on - strand, within ECD_00861 at 901.132 kb on + strand, within ECD_00861 at 901.133 kb on - strand, within ECD_00861 at 901.178 kb on + strand, within ECD_00861 at 901.218 kb on + strand, within ECD_00861 at 901.219 kb on - strand, within ECD_00861 at 901.401 kb on + strand, within ECD_00861 at 901.420 kb on + strand, within ECD_00861 at 901.560 kb on + strand, within ECD_00861 at 902.039 kb on + strand, within ECD_00862 at 902.039 kb on + strand, within ECD_00862 at 902.210 kb on + strand, within ECD_00862 at 902.247 kb on + strand, within ECD_00862 at 902.402 kb on + strand, within ECD_00862 at 902.663 kb on + strand at 902.789 kb on - strand, within ECD_00863 at 902.791 kb on + strand, within ECD_00863
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10 remove 899,884 - ECD_00860 0.17 -1.8 899,992 + ECD_00860 0.26 -0.7 900,057 - ECD_00860 0.32 +0.0 900,203 + ECD_00860 0.45 -0.5 900,204 - ECD_00860 0.45 +0.2 900,407 - ECD_00860 0.63 -1.5 900,420 + ECD_00860 0.64 +0.0 900,633 + ECD_00860 0.83 +0.2 900,656 + ECD_00860 0.85 -1.7 900,732 - -1.2 901,036 - ECD_00861 0.21 -2.5 901,132 + ECD_00861 0.31 -0.4 901,133 - ECD_00861 0.31 -1.3 901,178 + ECD_00861 0.36 -1.0 901,218 + ECD_00861 0.40 -0.4 901,219 - ECD_00861 0.40 -0.5 901,401 + ECD_00861 0.59 -0.1 901,420 + ECD_00861 0.61 -0.4 901,560 + ECD_00861 0.76 +0.1 902,039 + ECD_00862 0.30 +1.9 902,039 + ECD_00862 0.30 -0.2 902,210 + ECD_00862 0.50 -0.2 902,247 + ECD_00862 0.54 +0.0 902,402 + ECD_00862 0.73 +0.2 902,663 + +0.1 902,789 - ECD_00863 0.20 +0.1 902,791 + ECD_00863 0.20 +0.4
Or see this region's nucleotide sequence