Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00705 and ECD_00706 are separated by 113 nucleotides ECD_00706 and ECD_00707 are separated by 315 nucleotides
ECD_00705: ECD_00705 - zinc efflux system, at 742,290 to 743,231
_00705
ECD_00706: ECD_00706 - putative periplasmic protein, at 743,345 to 743,725
_00706
ECD_00707: ECD_00707 - 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, phenylalanine repressible, at 744,041 to 745,093
_00707
Position (kb) 743
744 Strain fitness (log2 ratio) -2
-1
0
1
2 at 742.500 kb on + strand, within ECD_00705 at 742.501 kb on - strand, within ECD_00705 at 742.501 kb on - strand, within ECD_00705 at 742.501 kb on - strand, within ECD_00705 at 742.501 kb on - strand, within ECD_00705 at 742.501 kb on - strand, within ECD_00705 at 742.501 kb on - strand, within ECD_00705 at 742.501 kb on - strand, within ECD_00705 at 742.501 kb on - strand, within ECD_00705 at 742.501 kb on - strand, within ECD_00705 at 742.501 kb on - strand, within ECD_00705 at 742.506 kb on + strand, within ECD_00705 at 742.506 kb on + strand, within ECD_00705 at 742.507 kb on - strand, within ECD_00705 at 742.507 kb on - strand, within ECD_00705 at 742.507 kb on - strand, within ECD_00705 at 742.507 kb on - strand, within ECD_00705 at 742.507 kb on - strand, within ECD_00705 at 742.547 kb on + strand, within ECD_00705 at 742.704 kb on - strand, within ECD_00705 at 742.774 kb on - strand, within ECD_00705 at 742.825 kb on - strand, within ECD_00705 at 742.933 kb on - strand, within ECD_00705 at 742.933 kb on - strand, within ECD_00705 at 742.944 kb on + strand, within ECD_00705 at 743.073 kb on - strand, within ECD_00705 at 743.186 kb on + strand at 743.260 kb on + strand at 743.261 kb on - strand at 743.346 kb on + strand at 743.537 kb on + strand, within ECD_00706 at 743.557 kb on + strand, within ECD_00706 at 743.699 kb on + strand at 743.739 kb on + strand at 743.749 kb on - strand at 743.790 kb on - strand at 743.791 kb on + strand at 743.792 kb on - strand at 743.999 kb on + strand at 743.999 kb on + strand at 744.254 kb on + strand, within ECD_00707 at 744.382 kb on + strand, within ECD_00707 at 744.385 kb on + strand, within ECD_00707 at 744.385 kb on + strand, within ECD_00707 at 744.385 kb on + strand, within ECD_00707 at 744.494 kb on + strand, within ECD_00707
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10 remove 742,500 + ECD_00705 0.22 -0.6 742,501 - ECD_00705 0.22 -0.4 742,501 - ECD_00705 0.22 -0.6 742,501 - ECD_00705 0.22 -2.6 742,501 - ECD_00705 0.22 -1.5 742,501 - ECD_00705 0.22 -1.4 742,501 - ECD_00705 0.22 -2.2 742,501 - ECD_00705 0.22 -1.0 742,501 - ECD_00705 0.22 +0.2 742,501 - ECD_00705 0.22 -1.0 742,501 - ECD_00705 0.22 +0.1 742,506 + ECD_00705 0.23 -0.9 742,506 + ECD_00705 0.23 -1.2 742,507 - ECD_00705 0.23 +0.1 742,507 - ECD_00705 0.23 -0.4 742,507 - ECD_00705 0.23 -0.3 742,507 - ECD_00705 0.23 -1.7 742,507 - ECD_00705 0.23 +0.1 742,547 + ECD_00705 0.27 -0.4 742,704 - ECD_00705 0.44 -1.8 742,774 - ECD_00705 0.51 +0.1 742,825 - ECD_00705 0.57 -1.5 742,933 - ECD_00705 0.68 -0.7 742,933 - ECD_00705 0.68 -0.2 742,944 + ECD_00705 0.69 -2.6 743,073 - ECD_00705 0.83 -2.5 743,186 + -1.1 743,260 + +1.8 743,261 - +1.4 743,346 + -1.1 743,537 + ECD_00706 0.50 -1.1 743,557 + ECD_00706 0.56 -0.5 743,699 + -2.6 743,739 + +0.2 743,749 - -1.5 743,790 - -0.8 743,791 + +0.6 743,792 - -0.6 743,999 + -0.1 743,999 + -0.6 744,254 + ECD_00707 0.20 -0.7 744,382 + ECD_00707 0.32 -1.0 744,385 + ECD_00707 0.33 -0.7 744,385 + ECD_00707 0.33 +1.6 744,385 + ECD_00707 0.33 -0.8 744,494 + ECD_00707 0.43 +0.2
Or see this region's nucleotide sequence