Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00641 and ECD_00642 are separated by 139 nucleotides ECD_00642 and ECD_00643 are separated by 139 nucleotides ECD_00643 and ECD_00644 are separated by 184 nucleotides ECD_00644 and ECD_00645 are separated by 25 nucleotides
ECD_00641: ECD_00641 - flavodoxin 1, at 670,809 to 671,339
_00641
ECD_00642: ECD_00642 - LexA-regulated protein, CopB family, at 671,479 to 671,772
_00642
ECD_00643: ECD_00643 - acyl-CoA esterase, at 671,912 to 672,676
_00643
ECD_00644: ECD_00644 - negative modulator of initiation of replication, at 672,861 to 673,406
_00644
ECD_00645: ECD_00645 - phosphoglucomutase, at 673,432 to 675,072
_00645
Position (kb) 671
672
673 Strain fitness (log2 ratio) -2
-1
0
1
2 at 671.462 kb on + strand at 671.633 kb on - strand, within ECD_00642 at 671.946 kb on - strand at 672.125 kb on - strand, within ECD_00643 at 672.125 kb on - strand, within ECD_00643 at 672.125 kb on - strand, within ECD_00643 at 672.217 kb on + strand, within ECD_00643 at 672.233 kb on + strand, within ECD_00643 at 672.233 kb on + strand, within ECD_00643 at 672.286 kb on + strand, within ECD_00643 at 672.286 kb on + strand, within ECD_00643 at 672.287 kb on - strand, within ECD_00643 at 672.315 kb on - strand, within ECD_00643 at 672.339 kb on + strand, within ECD_00643 at 672.383 kb on - strand, within ECD_00643 at 672.421 kb on + strand, within ECD_00643 at 672.524 kb on - strand, within ECD_00643 at 672.529 kb on + strand, within ECD_00643 at 672.545 kb on - strand, within ECD_00643 at 672.545 kb on - strand, within ECD_00643 at 672.576 kb on - strand, within ECD_00643 at 672.632 kb on - strand at 672.715 kb on + strand at 672.715 kb on + strand at 672.715 kb on + strand at 672.749 kb on + strand at 672.813 kb on + strand at 673.507 kb on + strand at 673.675 kb on + strand, within ECD_00645
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10 remove 671,462 + -1.4 671,633 - ECD_00642 0.52 +0.0 671,946 - -1.2 672,125 - ECD_00643 0.28 +0.5 672,125 - ECD_00643 0.28 +0.6 672,125 - ECD_00643 0.28 +2.3 672,217 + ECD_00643 0.40 -0.1 672,233 + ECD_00643 0.42 +0.0 672,233 + ECD_00643 0.42 -0.8 672,286 + ECD_00643 0.49 +0.4 672,286 + ECD_00643 0.49 +0.2 672,287 - ECD_00643 0.49 +0.2 672,315 - ECD_00643 0.53 +1.1 672,339 + ECD_00643 0.56 +0.4 672,383 - ECD_00643 0.62 +1.5 672,421 + ECD_00643 0.67 +0.5 672,524 - ECD_00643 0.80 +0.1 672,529 + ECD_00643 0.81 +0.7 672,545 - ECD_00643 0.83 +0.6 672,545 - ECD_00643 0.83 -1.1 672,576 - ECD_00643 0.87 +0.5 672,632 - +0.4 672,715 + -0.0 672,715 + +0.3 672,715 + -0.1 672,749 + -0.1 672,813 + +1.1 673,507 + -1.3 673,675 + ECD_00645 0.15 -2.1
Or see this region's nucleotide sequence