Strain Fitness in Escherichia coli BL21 around ECD_00603

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00602 and ECD_00603 are separated by 10 nucleotidesECD_00603 and ECD_00604 are separated by 2 nucleotides ECD_00602: ECD_00602 - septal ring protein, suppressor of prc, minor lipoprotein, at 624,465 to 625,553 _00602 ECD_00603: ECD_00603 - cell wall shape-determining protein, at 625,564 to 626,676 _00603 ECD_00604: ECD_00604 - penicillin-binding protein 2, transpeptidase involved in peptidoglycan synthesis, at 626,679 to 628,580 _00604 Position (kb) 625 626 627Strain fitness (log2 ratio) -1 0 1at 624.635 kb on - strand, within ECD_00602at 624.761 kb on + strand, within ECD_00602at 624.928 kb on - strand, within ECD_00602at 625.002 kb on - strand, within ECD_00602at 625.002 kb on - strand, within ECD_00602at 625.002 kb on - strand, within ECD_00602at 625.002 kb on - strand, within ECD_00602at 625.011 kb on - strand, within ECD_00602at 625.086 kb on - strand, within ECD_00602at 625.372 kb on + strand, within ECD_00602at 625.373 kb on - strand, within ECD_00602at 625.435 kb on - strand, within ECD_00602at 625.446 kb on - strandat 625.465 kb on - strandat 625.500 kb on - strandat 625.500 kb on - strandat 626.748 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
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624,635 - ECD_00602 0.16 +1.0
624,761 + ECD_00602 0.27 -1.0
624,928 - ECD_00602 0.43 +1.0
625,002 - ECD_00602 0.49 -0.8
625,002 - ECD_00602 0.49 -0.6
625,002 - ECD_00602 0.49 +1.0
625,002 - ECD_00602 0.49 -0.5
625,011 - ECD_00602 0.50 -0.6
625,086 - ECD_00602 0.57 -0.8
625,372 + ECD_00602 0.83 -0.4
625,373 - ECD_00602 0.83 -0.2
625,435 - ECD_00602 0.89 +0.2
625,446 - -0.6
625,465 - -0.5
625,500 - -0.3
625,500 - +0.1
626,748 - -1.0

Or see this region's nucleotide sequence